Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O12
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    32   0.12 
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   2.6  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   3.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   3.5  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   4.6  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   4.6  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   6.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.1  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   6.1  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 592 EHKRTSYSISDDEYNDPDIAEEERQ-ETAYVGSNTRREPALSTGH 461
           E++ TSYS  +   N  +IAEE R  E  + GSN     A STGH
Sbjct: 108 ENEETSYSEQNHTENTEEIAEESRPLERTHSGSN--HHEASSTGH 150


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 677 NVTLALNLFNETAMKERITIELIHYXKKIV 766
           N++  L LFNE+A+  R   E+IH  +++V
Sbjct: 386 NLSGVLGLFNESAVTSRALDEMIHPLRELV 415


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 595 LEHKRTSYSISDDEYNDPDIAEEERQETAYVGS---NTRREPALSTGHSFSS*R 443
           L+   ++YSI+   YN P +      +  +VG    +T R  A S    F+S R
Sbjct: 481 LKDASSTYSINPPSYNKPKVERNTTADPIFVGKRFYSTNRHKAFSRFADFNSHR 534


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -3

Query: 595 LEHKRTSYSISDDEYNDPDIAEEERQETAYVGS---NTRREPALSTGHSFSS*R 443
           L+   ++YSI+   YN P +      +  +VG    +T R  A S    F+S R
Sbjct: 481 LKDASSTYSINPPSYNKPKVERNTTADPIFVGKRFYSTNRHKAFSRFADFNSHR 534


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 202 SFIFNFCEKVNHLNFYICFRNFMLVILILLKIFTQRTGHTTINISL 339
           SF+      + HL+ + CF    +++LI LK +    GH   +++L
Sbjct: 730 SFLSFLQRPLGHLSLFSCF--LQILLLIQLKQWQPSVGHNFFSVTL 773


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 586 KRTSYSISDDEYNDPDIAEEERQETAYVGSNTRREPALSTGHSFSS 449
           KR   S+S+ ++ +PDI EEE     +  S +R++  L T   FS+
Sbjct: 383 KRNEDSLSESDF-EPDIIEEEDDSDEFNPSVSRKKAKL-TSSQFSN 426


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 632 HMALERNNTAENLWQNVTLALNLFNETAMKERIT 733
           H AL++N   +NL+Q+V L +N  N   M+ RIT
Sbjct: 120 HRALQQN--VQNLFQSVQLNINNPNFLIMQGRIT 151


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 144 FFYKH*FEFRTYIMTPLYFSSFFFR 70
           FFY   F F +++ T L+F +FFFR
Sbjct: 111 FFYFSLFSFFSFLFTSLHF-NFFFR 134


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 574 YSISDDEYNDPDIAEEERQETAYVGSNTRREPAL 473
           Y   D+EYN+P   + E+   +  G+  + E  L
Sbjct: 387 YDSEDEEYNNPSTQKTEKVSQSKKGAKVKEEKGL 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,245,000
Number of Sequences: 5004
Number of extensions: 62683
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)