Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O12
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0008 - 56178-57095                                               30   2.8  
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873...    30   2.8  
03_02_0377 - 7898075-7898605,7900782-7901000,7901079-7901142,790...    28   8.5  
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    28   8.5  

>07_01_0008 - 56178-57095
          Length = 305

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 522 DRRPRM*ALIRDASLRFRRGIASHRDDRGRASLAPTRIAAPLMS 391
           DR P + A++ DA+ R R  +A H      + LAP+   A L S
Sbjct: 92  DRHPFLLAIVFDAAARVRIDLAGHTTGTAASHLAPSSAPARLHS 135


>03_02_0472 -
           8737955-8738580,8738704-8738767,8739090-8739239,
           8739311-8739422,8739686-8739708
          Length = 324

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = +1

Query: 586 YVPSYRRRERDGKNDTYGVRKEQHS*EPLAERYSSTQLVQRDCYEREDYYRTNTLSXENR 765
           Y PSY   ERD  +  Y   +E+ S  P   R S +   +R  Y    Y R  + S   R
Sbjct: 123 YSPSYSPVERDRYSSRYSPERER-SYSPYGRRRSYSPYNRRRSY--SPYERRRSYSPHER 179

Query: 766 VRCASRLGRRP 798
            +  S  GR P
Sbjct: 180 RQSYSPYGRSP 190


>03_02_0377 -
           7898075-7898605,7900782-7901000,7901079-7901142,
           7901226-7901282,7901373-7901471,7901744-7901793,
           7902378-7902422,7902967-7903062
          Length = 386

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 309 YGSHHNQYISEHEKKID*NLI 371
           YG+    YIS+HE +ID NL+
Sbjct: 143 YGTFFRPYISQHENEIDRNLL 163


>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = -3

Query: 592 EHKRTSYSISDDEYNDPDIAEEERQETAYVGSNTRREPALSTGHSFSS*RPRPRVARTHT 413
           E +R    +   EY DP +A+EER++   +    +   A+   H   + R  P+  + ++
Sbjct: 394 EAERAKKELEQQEYYDPKLADEEREKGNQLFKEQKYPDAVK--HYTEAIRRNPKDPKVYS 451

Query: 412 HRCTSH 395
           +R   +
Sbjct: 452 NRAACY 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,043,829
Number of Sequences: 37544
Number of extensions: 374483
Number of successful extensions: 1024
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)