Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O10
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    26   2.1  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    24   6.4  

>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = -2

Query: 219 QSAKI*NSNMCYQRHLVFKNIKMGLNIHIMIIMQNPLEIYF*IYRNRF 76
           ++ K+ ++N+     L    +   LN+  ++ +++ +   F  YRNRF
Sbjct: 353 EAVKLDSTNLDLMMDLAVSYVNQSLNVQALVCLEDWIVNSFPQYRNRF 400


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 49  DNTATSSLKKAISVNLKINF*WILHNDHNMYIQTHLDVFKNKMTLIAHVGIS 204
           +N AT S K  ++++   N+   L ND+N+YI  H      K+ ++    +S
Sbjct: 192 ENLATFSTK-FVALSSHKNYICGLTNDNNLYILQHSHQAGTKLKVLGKYHVS 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,252
Number of Sequences: 5004
Number of extensions: 18022
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)