Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O10
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     29   1.5  
05_03_0447 - 14128029-14129054                                         29   1.5  
03_06_0404 + 33692534-33693607                                         28   2.6  
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    26   7.9  

>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 70  LKKAISVNLKINF*WILHNDHNMYIQTHLDVFKNKMTLIAH 192
           L+  +S++ KINF  +LH D +   +T    +K K+  +AH
Sbjct: 495 LELIVSISTKINFVAVLHKDQD---ETRFTDYKTKVRRLAH 532


>05_03_0447 - 14128029-14129054
          Length = 341

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 58  ATSSLKKAISVNLKINF*WILHNDHNMYIQTHLDVFKNKMTLIAHVGISY--FGGLP 222
           AT++ K  ++++L + F   + N   + +   LDV  NK+T     G+ +   GG+P
Sbjct: 17  ATATGKSKLAIDLALRFGGEVINSDKIQVHDGLDVVTNKVTDEERAGVPHHLIGGVP 73


>03_06_0404 + 33692534-33693607
          Length = 357

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 58  ATSSLKKAISVNLKINF*WILHNDHNMYIQTHLDVFKNKMT 180
           AT + K  ++V+L + F   + N   M I + LDV  NK+T
Sbjct: 60  ATGTGKSRLAVDLALRFGGEVINSDKMQIHSGLDVVTNKVT 100


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +1

Query: 112 WILHNDHNMYIQTHLDVFKNKMTLIAHV 195
           ++ H DH+ + Q  ++ F  + T+++H+
Sbjct: 175 FVTHYDHDEFYQRSIEEFNTEHTILSHI 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,801,211
Number of Sequences: 37544
Number of extensions: 88098
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)