Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O10
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF125971-3|AAN73292.1|  152|Caenorhabditis elegans Hypothetical ...    27   5.4  
AF125971-2|AAN73291.1|  458|Caenorhabditis elegans Hypothetical ...    27   5.4  

>U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical
           protein F29B9.8 protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 133 YDHYAKSTRNLFLNLPKSLFLN*MSLCYLLFASLTLA 23
           Y+H   S   LFL L  S+ ++ ++  YL+++ LT+A
Sbjct: 283 YEHVRNSKLRLFLFLLFSICVHVLTAPYLIWSGLTIA 319


>AF125971-3|AAN73292.1|  152|Caenorhabditis elegans Hypothetical
          protein Y4C6B.4b protein.
          Length = 152

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/25 (40%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = -3

Query: 77 FFKLDVAVLSFICLINV-STLLILN 6
          +F++ + +LSF+CL++V S  +I+N
Sbjct: 8  YFRIIIVLLSFMCLVSVCSNYIIIN 32


>AF125971-2|AAN73291.1|  458|Caenorhabditis elegans Hypothetical
          protein Y4C6B.4a protein.
          Length = 458

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/25 (40%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = -3

Query: 77 FFKLDVAVLSFICLINV-STLLILN 6
          +F++ + +LSF+CL++V S  +I+N
Sbjct: 8  YFRIIIVLLSFMCLVSVCSNYIIIN 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,668,791
Number of Sequences: 27780
Number of extensions: 98153
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)