Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_O09
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    40   2e-04
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   1.3  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.2  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   2.9  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   3.9  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   5.1  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   5.1  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   9.0  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 153 FPDKEQRKKCWDARDKYWECLDSQNIKDSSQKPLACTNFRKIFEKSCPTQWVTHFDRKRD 332
           FP+  Q K C+ +   Y+ C     IK   +  + C  F   ++  CP +WV  +D +R+
Sbjct: 21  FPNTNQTKHCFQSYIDYFRC-----IKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRE 75

Query: 333 FNVF 344
              F
Sbjct: 76  NGTF 79


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 343 NTLKSRFLSKCVTHW---VGQDFSNIFLKFVQANGFCELSL 230
           N L+ + LS   T W   +G ++ N+++KF+    F  L++
Sbjct: 746 NLLEKQLLSYNFTDWFASLGSEYENVYVKFISHYDFSSLNV 786


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 118 LDKASDRFRIFPNIYLNV 65
           +DKA+D+F + PN+ LN+
Sbjct: 11  IDKATDQFNLEPNLALNI 28


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +3

Query: 216 DSQNIK-DSSQKPLACTNFRKIF-EKSCPTQWVTHFDRKRDFNVFKEK---MQKEGYEPI 380
           + Q+++ D S  P   T   +I   +  P ++ T F  +      +E+   + K G E +
Sbjct: 22  EDQSVEIDCSSLPSDATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILILKSGLETL 81

Query: 381 KDSQ*ICLKNMFLLYIF 431
           KDS+ +C+ N  +  I+
Sbjct: 82  KDSESLCILNANIAAIY 98


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 273 KIFEKSCPTQWVTHFDRKRDFNVFKEKMQKEGYEPIKDSQ 392
           K F K   TQ   HF++KR+      K QK+  +  KD +
Sbjct: 274 KEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDEE 313


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 207 ECLDSQNI-KDSSQKPLACTNFRKIFEKSCPTQWVTHFDRKRDFNVFKEK 353
           EC D   I  D+ +  L   N  K+  +  P +  ++ +  ++FN+FKEK
Sbjct: 209 ECEDQLLILNDAREFSLTFLNTLKL-ARDFPNEIRSYLEASKNFNIFKEK 257


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +3

Query: 279 FEKSCPTQWVTHFDRKRDFNVFKEKMQKEGYEPIKDS 389
           FEK C      +F + +D  + ++ ++KE ++ +KD+
Sbjct: 355 FEKYCDNFKKNYFSKFKDSEITEDIVEKEYWKLVKDN 391


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 265 TLGKYLKSPALPNGLRILIENEISMYLKKKCKKRVM 372
           T+G  L   A+P GL I++   +++ + +  KKR +
Sbjct: 275 TIGVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAI 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,106
Number of Sequences: 5004
Number of extensions: 38127
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)