Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_N24
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 31 1.1
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 31 1.1
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 30 1.5
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 29 2.6
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 29 2.6
04_04_0437 + 25193263-25194627 29 3.4
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 29 3.4
04_04_1191 + 31599067-31600194 29 4.5
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 28 6.0
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 6.0
03_05_0908 + 28686855-28687328 28 6.0
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 28 7.9
07_01_0322 - 2258067-2258519,2258620-2258781,2258896-2259159,225... 28 7.9
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = -3
Query: 261 PLVRYFFSSDLE-SDPWSLLKPASNFSRVAASTIVAAF-QDLKAATEEGALR---GLSDT 97
PLV YF+ SD SLL SNF+R+A+ + ++ F + AA +E R GLS T
Sbjct: 153 PLVAYFWDKTFAWSDASSLLPFCSNFTRLASQSTMSGFVSAVDAALQEVGRRVEVGLSCT 212
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +3
Query: 303 STLLDCIQSGVXNLDSGVGIYAPDAESYSVFAELFDPIIEDYHNGFK 443
S LLD + D +++PD+ + VF+++ +P+++D G K
Sbjct: 103 SKLLDPKRGRTEVFDGFSSVFSPDSSQHDVFSQVMNPLVDDLLLGGK 149
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 412 GSKSSANTEYDSASGA*IPTPESKXSTPDWMQS 314
G K A T + S P PE+K TPDW+QS
Sbjct: 100 GKKEEAETS-ERHSSPPPPPPEAKKVTPDWLQS 131
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 182 LEKLEAGFSKLQGSDSKSLLKKYLTRGSIRQPEEQK 289
+EKLEA SK+ G D L K R +IR E+ K
Sbjct: 434 IEKLEAAASKIFGGDKSRLRKVEELRETIRATEDAK 469
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 298 NEVFLFFRLSNTSPGKVLLQQRLRVGSLELAETSLQFLEGCGVDHCCGFS 149
+++FLFF TSPGK++ Q+ L+ + QF+ VD GFS
Sbjct: 776 DDLFLFFI---TSPGKIIFQKHLQYLMVNCTRAPFQFISKYFVDE--GFS 820
>04_04_0437 + 25193263-25194627
Length = 454
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 282 NKKTSFGSTLLDCIQSGVXNLDSGVGIYAPDAESYSVFAELF 407
N TS GS D I+ G N+D YAP+ S+ A F
Sbjct: 365 NYFTSLGSCCWDLIKEGKLNVDRNCIPYAPNQRSHDECAAFF 406
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -2
Query: 622 PETLSSISLYWXSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 443
P + +Y ++ G+ GY S PQ ++ R+P+ T F GC S+F
Sbjct: 198 PTNWTESKIYITILQDGVYGYVESTPPQLYYNYVVSTNKSKRVPTTVT---FTNGCFSIF 254
Query: 442 LK 437
++
Sbjct: 255 VQ 256
>04_04_1191 + 31599067-31600194
Length = 375
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = -3
Query: 300 RMRSFCSSGCRILPLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFQDLKAATEEG 121
R RS ++ C +LPL S L LLK SN +++ DL+ EEG
Sbjct: 11 RHRSLRAALC-VLPLSMRLTPSPLALK--QLLKIPSNIIHSLRELVISNCPDLEFGGEEG 67
Query: 120 ALRG 109
ALRG
Sbjct: 68 ALRG 71
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 545 PLARGVPLQPLPHRVPVQGDGGQGLRHPVQP 637
P+ RG Q PH++ + D G G+++P P
Sbjct: 322 PMQRGAGAQSHPHQLRRKADQGMGMQNPGYP 352
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 550 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 443
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>03_05_0908 + 28686855-28687328
Length = 157
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 145 ILKSRNNGRRRNPREIGGWFQQAPG 219
+L ++G R +PRE+ GWF A G
Sbjct: 21 LLVHSSHGARPSPRELQGWFAAAAG 45
>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -1
Query: 491 ERVHVSPVLGRVLV----GLLEAIVVVLDDRVKELGEHGVRLGVRRVDTDAGVQVXDTRL 324
E VSP L ++ V G A +V D +++L HG +++V TD GV + RL
Sbjct: 1178 EEFSVSPQLSKIAVKPIHGEPNATKMVKDMELEKL--HGTIKALQKVVTDTGVVLEQERL 1235
Query: 323 D 321
D
Sbjct: 1236 D 1236
>07_01_0322 -
2258067-2258519,2258620-2258781,2258896-2259159,
2259196-2259294,2259723-2260131,2260223-2260350,
2261115-2261181,2262766-2262838,2262911-2263130
Length = 624
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 83 TPGSVVLRNKCRLDPARQGRSFIGR 9
TP S V + LDPA QG+ IGR
Sbjct: 112 TPPSSVETERAVLDPAMQGKDMIGR 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,762,142
Number of Sequences: 37544
Number of extensions: 385227
Number of successful extensions: 1306
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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