Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_N22
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    58   1e-09
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    31   0.16 
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    27   1.9  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   1.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.4  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    27   3.4  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   4.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   4.5  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.8  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    25   7.8  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
 Frame = +3

Query: 372 LPTVFKWEGGGKQVFISGTFTDW-KTIPMVKSHGDFVTIIDLPEGEHQYKYFVDGEWRHD 548
           +PT+ +W GGG+ V+++G+F+ W K I ++KS  D+  ++ L  G  ++K+ VDG W   
Sbjct: 99  VPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKSE-DYTVLLQLRPGTQRFKFLVDGIWCCS 157

Query: 549 PTVKVIDNGMGSKNNLVTVKMSD 617
                  +  G+  N + V+ ++
Sbjct: 158 SDFPTATDAEGNLYNYLEVEANE 180


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 633 LEIPQNLTFLLLLNYSWTPFHCQLLSL 553
           +E P N  FLLL + SW P  C++L L
Sbjct: 56  IEYPHNTHFLLLDSISWIPCTCKILKL 82


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 429 FTDWKTIPMVKSHGDFVTIIDLPEGEHQ 512
           F+DW TIP +  +G+FV   D+    H+
Sbjct: 89  FSDWPTIPQLYINGEFVGGSDILASMHK 116


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 134  SIFMPFFGLVTSGIPHLIFKWL 69
            ++ M  FG +T  IPHLI+ W+
Sbjct: 1492 TLLMLLFGTMTVWIPHLIYFWI 1513


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 131  IFMPFFGLVTSGIPHLIFKWL 69
            ++M  FG +T+ +PH I+ W+
Sbjct: 1335 MYMLLFGSITAWLPHYIYFWI 1355


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 58  LHTYNHLKIKWGMPEVTNPKNG 123
           +H     KI W +P+  NPK+G
Sbjct: 397 VHDLTGAKISWALPKPRNPKHG 418


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -3

Query: 110 LVTSGIPHLIFKWL--YVCRFV 51
           L+T G+ +LIF+WL  Y  RFV
Sbjct: 176 LLTLGLAYLIFRWLPKYFIRFV 197


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 173  WR*RSLIMIRRFVSIFMPFFGLVTSGIPHLIFKWLYVCRF 54
            W  RS +     +S+F+  F     G+   I  W Y C+F
Sbjct: 984  WHYRSYVHGNSRISVFLESFSCPVPGLEEKIIMWSY-CKF 1022


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
 Frame = -1

Query: 658  IPSLSLANA*NTSKSDIFTVTKLFLDPIPLSITFTVGSCLHSPSTKYLY*CSPSGKSIIV 479
            IPS S  N   TS S   TVT   L P   S   T  S + S ++       P  K+   
Sbjct: 904  IPSSSSRNEGTTSYSSNITVTSSTLKPSLTSSVSTASSYIASSASSNTLSTEP--KTFSS 961

Query: 478  TKSPCDFTMGIVFQSVNV-PEINTCFPPPSHLKTVGNTLISST 353
            + +  +    I   S+ V PE +      S L +  +T+ SST
Sbjct: 962  SSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIPSST 1004


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 403 PPPSHLKTVGNTLISSTILLPSVRVFDLSRC 311
           PP S+ +T+ +TL++ ++ L  + +  L RC
Sbjct: 191 PPESYFRTIKSTLLAISMFLGFITLTWLLRC 221


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 429 FTDWKTIPMVKSHGDFVTIIDL 494
           F+DW T P +   G+FV  +D+
Sbjct: 207 FSDWPTFPQLYIKGEFVGGLDI 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,664
Number of Sequences: 5004
Number of extensions: 62171
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)