Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_N22
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical pr...    95   3e-20
AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical...    81   7e-16
U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical pr...    51   9e-07
U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical pr...    51   9e-07
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    29   3.2  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    29   3.2  
U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class c...    29   3.2  
AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.      29   3.2  
AF068708-2|AAC17753.1|  464|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z81550-1|CAB04480.1|  269|Caenorhabditis elegans Hypothetical
           protein F55F3.1 protein.
          Length = 269

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
 Frame = +3

Query: 357 DDIKVLPTVFKWEGGG---KQVFISGTFTDWKT-IPMVKSHGDFVTIIDLPEGEHQYKYF 524
           DD    P VFKW       +QV+I G++  W T IP+VKS  DF TI+DL  G+H+YK+ 
Sbjct: 52  DDKSKFPVVFKWNINNATPRQVYICGSWDGWNTKIPLVKSTSDFSTIVDLEPGKHEYKFM 111

Query: 525 VDGEWRHDPTVKVIDNGMGSKNNLVTVKMSDFEVFQALAKD 647
           VD +W  D   +   N +G +NN+V +  +DFEVF AL KD
Sbjct: 112 VDSKWVVDDNQQKTGNNLGGENNVVMIDEADFEVFDALDKD 152


>AL117202-12|CAB55074.1|  274|Caenorhabditis elegans Hypothetical
           protein Y47D3A.15 protein.
          Length = 274

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
 Frame = +3

Query: 375 PTVFKWE----GGGKQVFISGTFTDWKT-IPMVKSHGDFVTIIDLPEGEHQYKYFVDGEW 539
           P VF+W        + V I G++ +W+T IPMVKS  DF TIIDL  G+++YK+ VDG W
Sbjct: 62  PVVFRWSFTQNAQPRVVHIVGSWDNWQTRIPMVKSTNDFSTIIDLQPGQYEYKFQVDGSW 121

Query: 540 RHDPTVKVIDNGMGSKNNLVTVKMSDFEVFQALAKD 647
             D       +  G++NN++ ++ SDF VF+AL +D
Sbjct: 122 VVDDNQGKAQDVHGNENNMINIQDSDFAVFEALDED 157


>U41543-4|AAM69116.1|  575|Caenorhabditis elegans Hypothetical
           protein F46H5.7b protein.
          Length = 575

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 20/70 (28%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
 Frame = +3

Query: 405 KQVFISGTFTDWK-TIPMVKS-HGDFVTIIDLPEGEHQYKYFVDGEWRHDPTVKVIDNGM 578
           ++V+++G+F +WK T+   K   G     ++L  G H++++ ++GEW      + + NG+
Sbjct: 506 QEVYLTGSFINWKCTLKCEKLVSGKKGVTVNLTRGRHEFRFMINGEWATSSDYQQVPNGL 565

Query: 579 GSKNNLVTVK 608
           G +NN++ V+
Sbjct: 566 GGQNNIIFVE 575


>U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical
           protein F46H5.7a protein.
          Length = 572

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 20/70 (28%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
 Frame = +3

Query: 405 KQVFISGTFTDWK-TIPMVKS-HGDFVTIIDLPEGEHQYKYFVDGEWRHDPTVKVIDNGM 578
           ++V+++G+F +WK T+   K   G     ++L  G H++++ ++GEW      + + NG+
Sbjct: 503 QEVYLTGSFINWKCTLKCEKLVSGKKGVTVNLTRGRHEFRFMINGEWATSSDYQQVPNGL 562

Query: 579 GSKNNLVTVK 608
           G +NN++ V+
Sbjct: 563 GGQNNIIFVE 572


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 58  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 222
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 325 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 378


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 58  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 222
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 358 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 411


>U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform a protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 58  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 222
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 235 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 288


>AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 58  LHTYNHLKIKWGMPEVTNPKNGIKMLTNRLIMIKDLHLQPKKGKPSRLIKS*TMI 222
           L TY  L  K G         G  +LTN+ + +K++ L+ ++G P   I+  +++
Sbjct: 235 LETYEKLD-KLGEGTYATVFRGRSILTNKFVALKEIRLEQEEGAPCTAIREVSLL 288


>AF068708-2|AAC17753.1|  464|Caenorhabditis elegans Hypothetical
           protein C18G1.6 protein.
          Length = 464

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 436 SVNVPEINTCFPPPSHLKTVGNTLISSTILLPSVRVFDLSRC 311
           ++N  +IN+ FP    +K   N  +      P +R+F LSRC
Sbjct: 44  TINTDQINSSFP----IKFYHNAYVDYRYETPRLRIFALSRC 81


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 297 IEYTEQRERSNTLTDGSKIVDDIKVLP 377
           IE+   RER N L  GSK  D++ ++P
Sbjct: 143 IEFERNRERFNFLKWGSKAFDNLLIVP 169


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 437  ICKCSRNKYLFSTSFPFENCW*YFNIVD 354
            IC    NKYL    F F+N   +FN+ D
Sbjct: 5363 ICSTGNNKYLLKNPFGFDNK--FFNLTD 5388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,336
Number of Sequences: 27780
Number of extensions: 344754
Number of successful extensions: 994
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)