Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_N20
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82057-4|CAB61024.2| 370|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81119-10|CAB61032.2| 370|Caenorhabditis elegans Hypothetical p... 29 3.2
L39925-1|AAA98782.1| 370|Caenorhabditis elegans cathepsin B-lik... 29 3.2
L39890-1|AAA98788.1| 370|Caenorhabditis elegans cathepsin B-lik... 29 3.2
AC024772-5|AAF60539.1| 407|Caenorhabditis elegans Hypothetical ... 29 3.2
AC024772-4|AAL32240.2| 441|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81097-9|CAB03174.2| 183|Caenorhabditis elegans Hypothetical pr... 28 7.3
U80814-2|AAB37993.1| 335|Caenorhabditis elegans Serpentine rece... 27 9.7
U80454-8|ABC71798.1| 623|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z82057-4|CAB61024.2| 370|Caenorhabditis elegans Hypothetical
protein T10H4.12 protein.
Length = 370
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 175 NIEDVLDACGTNFKYVCSFGYA 240
++ED+L CGT Y C GY+
Sbjct: 146 SVEDILSCCGTTCGYGCKGGYS 167
>Z81119-10|CAB61032.2| 370|Caenorhabditis elegans Hypothetical
protein T10H4.12 protein.
Length = 370
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 175 NIEDVLDACGTNFKYVCSFGYA 240
++ED+L CGT Y C GY+
Sbjct: 146 SVEDILSCCGTTCGYGCKGGYS 167
>L39925-1|AAA98782.1| 370|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 370
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 175 NIEDVLDACGTNFKYVCSFGYA 240
++ED+L CGT Y C GY+
Sbjct: 146 SVEDILSCCGTTCGYGCKGGYS 167
>L39890-1|AAA98788.1| 370|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 370
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 175 NIEDVLDACGTNFKYVCSFGYA 240
++ED+L CGT Y C GY+
Sbjct: 146 SVEDILSCCGTTCGYGCKGGYS 167
>AC024772-5|AAF60539.1| 407|Caenorhabditis elegans Hypothetical
protein Y40C5A.4a protein.
Length = 407
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -1
Query: 254 LQSSYAYPKLHTYLK----FVPHASKTSSILPIFNFNSIMLRITNNARFCFLL 108
+QS P L+T L F+P A+ + LPI+ N +R+ +FC+L+
Sbjct: 300 IQSLQELPSLYTVLSDISSFLPIAA-CALRLPIYTINDRQIRVEVRRKFCYLI 351
>AC024772-4|AAL32240.2| 441|Caenorhabditis elegans Hypothetical
protein Y40C5A.4b protein.
Length = 441
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -1
Query: 254 LQSSYAYPKLHTYLK----FVPHASKTSSILPIFNFNSIMLRITNNARFCFLL 108
+QS P L+T L F+P A+ + LPI+ N +R+ +FC+L+
Sbjct: 316 IQSLQELPSLYTVLSDISSFLPIAA-CALRLPIYTINDRQIRVEVRRKFCYLI 367
>Z81097-9|CAB03174.2| 183|Caenorhabditis elegans Hypothetical
protein K07A1.1 protein.
Length = 183
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 55 KIHIQNTDLFRNLYY-PNFSKKQNRALFVILNMI 153
++ +N D+F L Y P F+KK + +F +L ++
Sbjct: 22 QVSTENCDVFPALVYIPKFTKKMEKGMFCVLTIM 55
>U80814-2|AAB37993.1| 335|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 8 protein.
Length = 335
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 197 ASKTSSILPIFNFNSIMLRITNNARFCF 114
A + SI+P+F+ N IM NN CF
Sbjct: 306 AVNSQSIIPLFSLNKIMNVKNNNVSDCF 333
>U80454-8|ABC71798.1| 623|Caenorhabditis elegans Hypothetical
protein T16A1.1b protein.
Length = 623
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 263 SNILQSSYAYPKLHTYLKFVPHASKTSSILPIFNFNSIMLRITNNARFCF 114
SNI ++ Y Y K + + +P P++ F+ L NN+ FCF
Sbjct: 568 SNINEAEYNYSKTKKHCE-IPWLVCQCITNPVYPFSGEFLLKENNSAFCF 616
>AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical
protein C50A2.2 protein.
Length = 557
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 215 LKFVPHASKTSSILPIFNFNS 153
+K H+S+ +ILP+FN NS
Sbjct: 525 IKITEHSSRFVAILPVFNLNS 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,076
Number of Sequences: 27780
Number of extensions: 254209
Number of successful extensions: 564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -