Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_N17
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 30 0.35
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 2.5
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.5
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 27 3.3
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 3.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 5.7
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 26 5.7
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 26 5.7
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 7.5
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.9
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 9.9
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 25 9.9
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 9.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 29.9 bits (64), Expect = 0.35
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 402 GYYCTICNIILPNPVVDQHLKSDTH 476
G+ C +C I +PN H KS TH
Sbjct: 70 GFACEVCQIYIPNSKKINHFKSMTH 94
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 441 PVVDQHLKSDTHTSELGRAVASVNAYKVV*DVKYRFNGSVINMNSSKLL 587
P H+ S H +++++N Y D+K R + +M KLL
Sbjct: 163 PTASAHISSSDHEKSSSVSLSALNNYNKTTDIKARSLDRLSDMTRPKLL 211
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 411 CTICNIILPNPVVDQHLKSDTHTSEL 488
C C LP+PVV +H KS + T+ L
Sbjct: 203 CPTCRFGLPSPVVLEHAKSHSITTFL 228
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = +3
Query: 255 KCVFCNREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNI 428
+C+ C+R + D A K ++ + A+ Y E I + YC C I
Sbjct: 22 RCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAI 79
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 405 YYCTICNIILPNPVVDQ-HLKSDTHTSELGRAVASV 509
+ CT C + N + H KSD H L R VAS+
Sbjct: 5 FACTTCTVAFNNAESQKIHWKSDWHHYNLKRKVASL 40
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 333 KAMTSNPNLEDYGENLIRNLRGNGYYCTICNIILPNPVV 449
K MTS LE E L+ + + +C C+I PN ++
Sbjct: 18 KNMTSENGLEHQFEELLVEKQYSEEHCAYCHIKNPNSIL 56
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/58 (25%), Positives = 22/58 (37%)
Frame = +3
Query: 255 KCVFCNREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNI 428
+C+ C+R + D A K + + A+ Y E I L YC C I
Sbjct: 22 RCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAI 79
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 300 KEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNIILPN 440
KE KKT L A T + + +YGE + ++ N + + + ++ N
Sbjct: 608 KEDMKKTCASLSAFTKDVYIPNYGEIINVSIDVNAFSLKLADDLIKN 654
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 288 DHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIR 386
D K K T GH PNLE N I+
Sbjct: 423 DEVVKFIEKNTQGHSLESKKEPNLESQSSNKIK 455
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -1
Query: 150 IFCF--FIRVRYAFRSSQWWKRLFFS 79
I+C+ F ++R+ S WW LFF+
Sbjct: 210 IYCYVRFFKLRHTPFSRPWWAWLFFT 235
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1
Query: 540 ISRLKPLYKHSHWQQLSLIQMYEYPILNVDLQLDL 436
I + P YK+S+ +S++QMY+ I V + + L
Sbjct: 32 ILSILPYYKNSYSDFISVLQMYKVHIRMVSIYIFL 66
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 428 DVTYCAVITIATE---VSYQIFSIILQIWIRSHS 336
DV AV T A E V YQI + +++++ SHS
Sbjct: 477 DVLRIAVKTFADETLEVKYQILELSVRLYVLSHS 510
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/40 (22%), Positives = 20/40 (50%)
Frame = +3
Query: 255 KCVFCNREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGE 374
K + ++E DLD+ K+ + + T+ PN ++ +
Sbjct: 60 KIIIPDKEFDLDYYLKDETESIQSPFEGFTAQPNFSNFNK 99
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 249 RFPLLLARGSHQKKQQVCYYFSKL 178
R+PLLL GS + QQ C F +L
Sbjct: 91 RWPLLLLAGSSETFQQNCGAFQEL 114
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 563 DHRTVKSIFHVLNHFISIHTGNSSP*FRCMSIR 465
DH K+I F+SIHT NSS C R
Sbjct: 204 DHTLTKAISENSFDFLSIHTFNSSTGEGCSGSR 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,989
Number of Sequences: 5004
Number of extensions: 59999
Number of successful extensions: 135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -