Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_N17
(672 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK096941-1|BAC04907.1| 126|Homo sapiens protein ( Homo sapiens ... 33 1.2
CR456854-1|CAG33135.1| 167|Homo sapiens CGGBP1 protein. 31 3.8
BC052980-1|AAH52980.1| 167|Homo sapiens CGG triplet repeat bind... 31 3.8
AL117392-1|CAB55894.1| 168|Homo sapiens hypothetical protein pr... 31 3.8
AJ000258-1|CAA03974.1| 167|Homo sapiens p20-CGGBP protein. 31 3.8
AF094481-1|AAD04161.1| 167|Homo sapiens trinucleotide repeat DN... 31 3.8
Z19002-1|CAA79489.1| 673|Homo sapiens kruppel-like zinc finger ... 31 5.0
BC130656-1|AAI30657.1| 126|Homo sapiens hypothetical gene suppo... 31 5.0
BC130299-1|AAI30300.1| 126|Homo sapiens hypothetical gene suppo... 31 5.0
BC010545-1|AAH10545.1| 477|Homo sapiens zinc finger protein 622... 31 5.0
BC008752-1|AAH08752.1| 477|Homo sapiens zinc finger protein 622... 31 5.0
AY046059-1|AAL02121.1| 477|Homo sapiens zinc finger-like protei... 31 5.0
X58822-1|CAA41626.1| 195|Homo sapiens interferon-omega 1 protein. 30 6.6
X02669-1|CAA26501.1| 174|Homo sapiens human interferon omega pr... 30 6.6
M11003-1|AAA52724.1| 195|Homo sapiens interferon-alpha protein. 30 6.6
BC117292-1|AAI17293.1| 195|Homo sapiens interferon, omega 1 pro... 30 6.6
BC117290-1|AAI17291.1| 195|Homo sapiens interferon, omega 1 pro... 30 6.6
BC069095-1|AAH69095.1| 195|Homo sapiens interferon, omega 1 pro... 30 6.6
AY780805-1|AAV49320.1| 172|Homo sapiens IFN-omega 1 precursor p... 30 6.6
AL390882-2|CAH70158.1| 195|Homo sapiens interferon, omega 1 pro... 30 6.6
AL050350-1|CAI42509.1| 310|Homo sapiens D-aspartate oxidase pro... 30 6.6
AK131408-1|BAD18555.1| 649|Homo sapiens protein ( Homo sapiens ... 30 6.6
U25670-1|AAA70091.1| 174|Homo sapiens interferon omega-1 protein. 30 8.7
>AK096941-1|BAC04907.1| 126|Homo sapiens protein ( Homo sapiens
cDNA FLJ39622 fis, clone SMINT2001199. ).
Length = 126
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 401 WLLLHNM*HHLAKSSCRSTFKIGYSY 478
WLLL + HHL +SC TF + YS+
Sbjct: 39 WLLLCSCLHHLYNASCHPTFPVEYSH 64
>CR456854-1|CAG33135.1| 167|Homo sapiens CGGBP1 protein.
Length = 167
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 396 GNGYYCTICNIILPN---PVVDQHLKSDTHT 479
G +CT CN++L + + HLKS THT
Sbjct: 38 GGKLFCTSCNVVLNHVRKSAISDHLKSKTHT 68
>BC052980-1|AAH52980.1| 167|Homo sapiens CGG triplet repeat binding
protein 1 protein.
Length = 167
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 396 GNGYYCTICNIILPN---PVVDQHLKSDTHT 479
G +CT CN++L + + HLKS THT
Sbjct: 38 GGKLFCTSCNVVLNHVRKSAISDHLKSKTHT 68
>AL117392-1|CAB55894.1| 168|Homo sapiens hypothetical protein
protein.
Length = 168
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 396 GNGYYCTICNIILPN---PVVDQHLKSDTHT 479
G +CT CN++L + + HLKS THT
Sbjct: 38 GGKLFCTSCNVVLNHVRKSAISDHLKSKTHT 68
>AJ000258-1|CAA03974.1| 167|Homo sapiens p20-CGGBP protein.
Length = 167
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 396 GNGYYCTICNIILPN---PVVDQHLKSDTHT 479
G +CT CN++L + + HLKS THT
Sbjct: 38 GGKLFCTSCNVVLNHVRKSAISDHLKSKTHT 68
>AF094481-1|AAD04161.1| 167|Homo sapiens trinucleotide repeat DNA
binding protein p20-CGGBP protein.
Length = 167
Score = 31.1 bits (67), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 396 GNGYYCTICNIILPN---PVVDQHLKSDTHT 479
G +CT CN++L + + HLKS THT
Sbjct: 38 GGKLFCTSCNVVLNHVRKSAISDHLKSKTHT 68
>Z19002-1|CAA79489.1| 673|Homo sapiens kruppel-like zinc finger
protein protein.
Length = 673
Score = 30.7 bits (66), Expect = 5.0
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 252 YKCVFCNREMDLDHAYKEYHKKTAGH--LKAMTSNPNLEDYGENLIRNLR-GNG---YYC 413
Y+C C+++ L H + +++ G + + DY +I++LR NG Y C
Sbjct: 574 YECNGCDKKFSLKHQLETHYRVHTGEKPFECKLCHQRSRDYSA-MIKHLRTHNGASPYQC 632
Query: 414 TICNIILPN-PVVDQHLK 464
TIC P+ + +H+K
Sbjct: 633 TICTEYCPSLSSMQKHMK 650
>BC130656-1|AAI30657.1| 126|Homo sapiens hypothetical gene
supported by AK128882 protein.
Length = 126
Score = 30.7 bits (66), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 401 WLLLHNM*HHLAKSSCRSTFKIGYSY 478
WLLL + HHL +SC F + YS+
Sbjct: 39 WLLLCSCLHHLYNASCHPAFPVEYSH 64
>BC130299-1|AAI30300.1| 126|Homo sapiens hypothetical gene
supported by AK128882 protein.
Length = 126
Score = 30.7 bits (66), Expect = 5.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 401 WLLLHNM*HHLAKSSCRSTFKIGYSY 478
WLLL + HHL +SC F + YS+
Sbjct: 39 WLLLCSCLHHLYNASCHPAFPVEYSH 64
>BC010545-1|AAH10545.1| 477|Homo sapiens zinc finger protein 622
protein.
Length = 477
Score = 30.7 bits (66), Expect = 5.0
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Frame = +3
Query: 246 SVYKCVFCN---REMDLDHA-YK-EYHKKTAGHLKAMTSNPNLEDYGENLI-------RN 389
+ Y C+ C R+ D+ A YK ++H+ A + E + E +
Sbjct: 2 ATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEEE 61
Query: 390 LRGNGYYCTICNIILPN-PVVDQHLKSDTHTSELGRAVASVN 512
+G+ YCT+C+ + + HLKS H +AV +VN
Sbjct: 62 SKGSATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVN 103
>BC008752-1|AAH08752.1| 477|Homo sapiens zinc finger protein 622
protein.
Length = 477
Score = 30.7 bits (66), Expect = 5.0
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Frame = +3
Query: 246 SVYKCVFCN---REMDLDHA-YK-EYHKKTAGHLKAMTSNPNLEDYGENLI-------RN 389
+ Y C+ C R+ D+ A YK ++H+ A + E + E +
Sbjct: 2 ATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEEE 61
Query: 390 LRGNGYYCTICNIILPN-PVVDQHLKSDTHTSELGRAVASVN 512
+G+ YCT+C+ + + HLKS H +AV +VN
Sbjct: 62 SKGSATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVN 103
>AY046059-1|AAL02121.1| 477|Homo sapiens zinc finger-like protein 9
protein.
Length = 477
Score = 30.7 bits (66), Expect = 5.0
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Frame = +3
Query: 246 SVYKCVFCN---REMDLDHA-YK-EYHKKTAGHLKAMTSNPNLEDYGENLI-------RN 389
+ Y C+ C R+ D+ A YK ++H+ A + E + E +
Sbjct: 2 ATYTCITCRVAFRDADMQRAHYKTDWHRYNLRRKVASMAPVTAEGFQERVRAQRAVAEEE 61
Query: 390 LRGNGYYCTICNIILPN-PVVDQHLKSDTHTSELGRAVASVN 512
+G+ YCT+C+ + + HLKS H +AV +VN
Sbjct: 62 SKGSATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVN 103
>X58822-1|CAA41626.1| 195|Homo sapiens interferon-omega 1 protein.
Length = 195
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 48 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 92
>X02669-1|CAA26501.1| 174|Homo sapiens human interferon omega
precursor protein.
Length = 174
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 27 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 71
>M11003-1|AAA52724.1| 195|Homo sapiens interferon-alpha protein.
Length = 195
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 48 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 92
>BC117292-1|AAI17293.1| 195|Homo sapiens interferon, omega 1
protein.
Length = 195
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 48 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 92
>BC117290-1|AAI17291.1| 195|Homo sapiens interferon, omega 1
protein.
Length = 195
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 48 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 92
>BC069095-1|AAH69095.1| 195|Homo sapiens interferon, omega 1
protein.
Length = 195
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 48 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 92
>AY780805-1|AAV49320.1| 172|Homo sapiens IFN-omega 1 precursor
protein.
Length = 172
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 25 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 69
>AL390882-2|CAH70158.1| 195|Homo sapiens interferon, omega 1
protein.
Length = 195
Score = 30.3 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 48 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFH 92
>AL050350-1|CAI42509.1| 310|Homo sapiens D-aspartate oxidase
protein.
Length = 310
Score = 30.3 bits (65), Expect = 6.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 291 HAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNG 404
H K++ ++T HL A+ ++ D G +L+ ++G+G
Sbjct: 90 HTQKQWFRETFNHLFAIANSAEAGDAGVHLVSGIKGSG 127
>AK131408-1|BAD18555.1| 649|Homo sapiens protein ( Homo sapiens
cDNA FLJ16514 fis, clone MESAN2014412, highly similar
to Mus musculus zfh-4 mRNA for zinc-finger homeodomain
protein 4. ).
Length = 649
Score = 30.3 bits (65), Expect = 6.6
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Frame = +3
Query: 237 IAGSVYKCVFCNREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLR----GNG 404
+ G +Y+C CN L A + H +T H++ ++++ G++ L+ GN
Sbjct: 512 VIGDIYQCKLCNYNTQL-KANFQLHCETDKHMQKYQLVAHIKEGGKSNEWRLKCIAIGNP 570
Query: 405 YY--CTICNIILPNPVVDQHLKSDTHTSELGRAVASVNAYKVV*DVKYRFNGSVINMNS 575
+ C C+ N V L + H E A++ YKV D+ +R++ +NS
Sbjct: 571 VHLKCNACD-YYTNSVDKLRLHTTNHRHE-----AALKLYKVSSDIHFRWHRVEKGINS 623
>U25670-1|AAA70091.1| 174|Homo sapiens interferon omega-1 protein.
Length = 174
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 285 SPFLCYKIHTYTRFPLLLARGSHQKKQQVCYYFSKLQSHIVFLKH 151
SPFLC K RFP + +GS +K V ++ I L H
Sbjct: 27 SPFLCLKDRRDFRFPQEMVKGSQLQKAHVMSALHEMLQQIFSLFH 71
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,342,356
Number of Sequences: 237096
Number of extensions: 2012223
Number of successful extensions: 7643
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 7507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7633
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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