Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_N17
(672 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21324-8|AAA62561.1| 190|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z49908-4|CAA90095.1| 535|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr... 29 3.0
U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory recep... 29 4.0
U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant respons... 29 4.0
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 29 4.0
AF016433-8|AAB65386.2| 333|Caenorhabditis elegans Hypothetical ... 29 4.0
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 28 5.3
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr... 28 5.3
X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger pro... 28 5.3
U23515-4|AAU87816.1| 333|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 28 5.3
Z83119-1|CAB05578.1| 250|Caenorhabditis elegans Hypothetical pr... 28 6.9
U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav (... 27 9.2
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (... 27 9.2
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein. 27 9.2
>U21324-8|AAA62561.1| 190|Caenorhabditis elegans Hypothetical
protein C35D10.5 protein.
Length = 190
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 234 IIAGSVYKCVFCNREMDLDHAYK--EYHKKTAGHLKAMTSN 350
++AG++++C++ NRE+D H K Y + T L+ +N
Sbjct: 133 VLAGAIWRCLYMNREVDPIHLLKVVTYMRSTVAWLETQDTN 173
>Z49908-4|CAA90095.1| 535|Caenorhabditis elegans Hypothetical
protein C07E3.4 protein.
Length = 535
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 264 FCNREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRG 398
FCN+ D+ +E+ G L ++ N ED+ N +RN G
Sbjct: 203 FCNKNNDIQKIREEF-----GFLDSLVCNKTTEDFEANKVRNREG 242
>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical protein
F33H1.4 protein.
Length = 1385
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Frame = +3
Query: 252 YKCVFCNREM--------DLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGY 407
+KC CNR + + H YKE+H H++ LE G+ + +
Sbjct: 1065 WKCRLCNRNVYGAVISAGAIKH-YKEFHPAETEHMQYELVKARLERIGDGSMEFVHPQLV 1123
Query: 408 YCTICNI 428
C ICN+
Sbjct: 1124 ECLICNL 1130
>U49449-1|AAB00117.1| 339|Caenorhabditis elegans olfactory receptor
Odr-10 protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 449 YNWIWQDDVTYCAVITIATEVSYQIFSIILQIWIRSHSF*MAGSFFVIFFIG 294
YNWI +++V+Y A + E + + + H F M+ +F V+F+ G
Sbjct: 172 YNWIKKENVSYIAYVYYQYENGVRHIYLKNLLGCFVHYFVMSMTFVVMFYCG 223
>U42830-6|AAC48279.2| 339|Caenorhabditis elegans Odorant response
abnormal protein10 protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 449 YNWIWQDDVTYCAVITIATEVSYQIFSIILQIWIRSHSF*MAGSFFVIFFIG 294
YNWI +++V+Y A + E + + + H F M+ +F V+F+ G
Sbjct: 172 YNWIKKENVSYIAYVYYQYENGVRHIYLKNLLGCFVHYFVMSMTFVVMFYCG 223
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +3
Query: 255 KCVFCNREMDLDHAYKEYHKKTAGHLKAMTSN--PNLEDYGENLIRNLRGNGYYCTICNI 428
+C C+ A+ H +A HL+ +L D + R Y C +C
Sbjct: 533 ECEMCSETFATKEAFLS-HLNSARHLQQAKKQLENSLVDLNSQDVEKQRI--YVCNVCKQ 589
Query: 429 ILPNPV-VDQHLKSDTHTSELGR 494
P +D H++S TH S + R
Sbjct: 590 SYPQAANLDVHMRSMTHQSRMSR 612
>AF016433-8|AAB65386.2| 333|Caenorhabditis elegans Hypothetical
protein C09H5.7 protein.
Length = 333
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 279 FLCYKIHTYTRFPLLLARGSHQ 214
FLCYKI Y RF +L RG+H+
Sbjct: 131 FLCYKIKFYDRFYML--RGNHE 150
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 270 NREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNL 392
N MDLD KE H + + ++ N +LE+Y N R L
Sbjct: 1011 NDYMDLDPLDKELHFEISQSIRQSKLNESLEEYERNRERQL 1051
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 270 NREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNL 392
N MDLD KE H + + ++ N +LE+Y N R L
Sbjct: 1011 NDYMDLDPLDKELHFEISQSIRQSKLNESLEEYERNRERQL 1051
>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
protein F52E10.1 protein.
Length = 1201
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 393 RGNGYYCTICNIILPNPVVDQHLKSD 470
R +GY+C IC II+ N ++H +D
Sbjct: 517 RKDGYHCAICKIIVYNRSHEEHWIND 542
>X58520-1|CAA41410.1| 1203|Caenorhabditis elegans zinc-finger
protein protein.
Length = 1203
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 393 RGNGYYCTICNIILPNPVVDQHLKSD 470
R +GY+C IC II+ N ++H +D
Sbjct: 519 RKDGYHCAICKIIVYNRSHEEHWIND 544
>U23515-4|AAU87816.1| 333|Caenorhabditis elegans Hypothetical
protein R144.12 protein.
Length = 333
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 198 CYYFSKLQSHIVFLKHIFCFFIRVRYAFRSSQWWKRLFFSNLVHISWRKKCSRL 37
CY FS H +FL+ ++ + A RS W FS+ + W SR+
Sbjct: 165 CYAFSDNAHHFLFLRDLYAYDGYASLAQRSISWATWTTFSS-IFTYWIHNSSRI 217
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 270 NREMDLDHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNL 392
N MDLD KE H + + ++ N +LE+Y N R L
Sbjct: 1011 NDYMDLDPLDKELHFEISQSIRQSKLNESLEEYERNRERQL 1051
>Z83119-1|CAB05578.1| 250|Caenorhabditis elegans Hypothetical
protein R05H10.1 protein.
Length = 250
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 147 KCVSEKQYVIVTLRNNNKLVVSSDGYHGLII 239
+C+ E Y + N +KLV + DG HG+ I
Sbjct: 188 QCLKEFPYSGIVSSNGDKLVETDDGSHGMRI 218
>U23520-5|AAC46554.4| 975|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform a protein.
Length = 975
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 288 DHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNI 428
D+ HK + NP D + L++ L+ GY C CN+
Sbjct: 572 DYLRDTNHKVAFHSFRVDVKNPATCDVCDKLMKGLQYQGYKCESCNM 618
>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
(oncogene) relatedprotein 1, isoform b protein.
Length = 1007
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 288 DHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNI 428
D+ HK + NP D + L++ L+ GY C CN+
Sbjct: 604 DYLRDTNHKVAFHSFRVDVKNPATCDVCDKLMKGLQYQGYKCESCNM 650
>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
Length = 1007
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 288 DHAYKEYHKKTAGHLKAMTSNPNLEDYGENLIRNLRGNGYYCTICNI 428
D+ HK + NP D + L++ L+ GY C CN+
Sbjct: 604 DYLRDTNHKVAFHSFRVDVKNPATCDVCDKLMKGLQYQGYKCESCNM 650
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,344,020
Number of Sequences: 27780
Number of extensions: 336413
Number of successful extensions: 789
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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