Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_N16
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.75 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 550  GLNSLFTDLLNFDDPLNIEAAEMYNKDKVQFQVKVQEYISK 672
            GL SL +++ N D  L++   +   K K+  + K+ EY+ K
Sbjct: 1355 GLFSL-SEIDNLDVSLDVSNPKNAGKKKIDVRAKLNEYLDK 1394


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 428 KHFTLGGAILYSSVIM 381
           KHF +G AI+YS +++
Sbjct: 54  KHFHIGLAIIYSMLLI 69


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 428 KHFTLGGAILYSSVIM 381
           KHF +G AI+YS +++
Sbjct: 54  KHFHIGLAIIYSMLLI 69


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 566  KSEFKPHTTSLSLLVGAQPCSSIEVCLSNDKQMSPSTLILGC 441
            K   +    S +  V A+P S + +  S+ K +SP  L+  C
Sbjct: 880  KCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSC 921


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,851
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)