Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_N14
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906 40 0.003
01_06_1741 + 39581656-39581680,39582627-39582697,39582779-395828... 38 0.008
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41... 35 0.058
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 31 1.3
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 29 5.1
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 29 5.1
03_02_0793 + 11240685-11240990 28 8.8
>05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906
Length = 104
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = +3
Query: 162 FWGLIMEPNK--RYTQVVEKPFHISQAAMDTSTGDNEPCQVMVVVDGKNFLVCTLQKNKC 335
FWGL ++P + + E+ H+SQAA+ S ++ + V D + ++ TL +K
Sbjct: 3 FWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSADKF 62
Query: 336 IQVPLDLYFKTGDSIAFLTNGKCNVHLTGY 425
Q+ DL F ++ T+ +V +GY
Sbjct: 63 PQIQFDLVFDKEFELSH-TSKTASVFFSGY 91
>01_06_1741 +
39581656-39581680,39582627-39582697,39582779-39582898,
39583034-39583094,39583186-39583242,39583413-39583600,
39583747-39583818,39583953-39584180
Length = 273
Score = 37.9 bits (84), Expect = 0.008
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +3
Query: 162 FWGLIMEPNKRYTQVVEKP----FHISQAAMDTSTGDNEPCQVMVVVDGKNFLVCTLQKN 329
FWG+ + P + T + + P +HISQ A++ NE QV VDGK L+ TL
Sbjct: 7 FWGVAVRPGE--TVMCDPPGEFYYHISQIALEPGEL-NENVQVFGEVDGKRILLGTLSVE 63
Query: 330 KCIQVPLDL-YFKTGDSIAFLTN 395
Q+ +DL YF +A T+
Sbjct: 64 HRPQLSIDLEYFSLTFCLAVCTS 86
>09_01_0020 +
413723-413738,413867-413934,414849-415144,415275-415400,
415484-415566,416514-416628,416755-416847,416963-417021,
417609-417684,417812-417901,418050-418202,418294-418480,
418752-418839,419077-419125,419233-419329
Length = 531
Score = 35.1 bits (77), Expect = 0.058
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +3
Query: 162 FWGLIMEPNKRYTQ-VVEKPFHISQAAMDTSTGDNEPCQVMVVVDGKNFLVCTLQKNKCI 338
FWGL ++P + YT I+QA + + Q D + +C L +
Sbjct: 4 FWGLELKPGEAYTHHSAPARLRITQAVLGSCDQGWTTLQCDTN-DRETVRLCVLNPGLAV 62
Query: 339 QVPLDLYFKTGDSIAFLTNGKCNVHLTGY 425
L+L + +++ +G+ ++HL+GY
Sbjct: 63 ACHLELELQKDENVLLSVDGQNSIHLSGY 91
>03_06_0209 - 32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -3
Query: 333 ICFSGECTRESSFHQQQPSLDMAHYHQLMCP 241
ICFSG E+ F P D +H CP
Sbjct: 947 ICFSGATNGENDFESGLPEFDPVKHHNSYCP 977
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 168 GLIMEPNKRYTQVVEKP--FHISQAAM-DTSTGDNEPCQVMVVVDGKNFLVCTLQKNKCI 338
G+ ++P K + V+ HISQ A+ +T +E V V VDGK ++ L
Sbjct: 1578 GIEVKPGKAVSFNVDDECVIHISQVALGETKKAGSENVVVSVKVDGKKTVIGNLSAKNHP 1637
Query: 339 QVPLDLY 359
Q DL+
Sbjct: 1638 QFMCDLF 1644
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 126 LVIYASDLTINMFWGLIMEPNKRYTQVVEKPFHISQAAMDTSTGDNEP 269
+VI T + W EP + +V++P H S T GD +P
Sbjct: 22 IVIDNGASTFRIGWAGEAEPRVAFRNIVQRPRHRSSGETVTVVGDTDP 69
>03_02_0793 + 11240685-11240990
Length = 101
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 249 MCP*QPVKCGTASPPLGCTVCWVPLLIP 166
MC P G ++PP C++C +L+P
Sbjct: 1 MCSMPPALTGGSAPPSSCSLCQAIVLLP 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,827,514
Number of Sequences: 37544
Number of extensions: 266455
Number of successful extensions: 619
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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