Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_N05
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 30 0.29
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 29 0.66
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 27 2.0
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 27 2.7
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 27 2.7
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 2.7
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 3.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 4.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.2
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 415 VPSEGVHRVLENDGSHVSVHDVTSPPTAAADEVTPKVFHGAARLIQPGSATSAPQ 579
V + + +LEN SHV V A D++ ++ H A +++ GS T P+
Sbjct: 402 VTLKAIETLLENTHSHVLPILVACQTNHAVDQILIRLLHQGASVMRLGSRTKDPE 456
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 29.1 bits (62), Expect = 0.66
Identities = 17/69 (24%), Positives = 27/69 (39%)
Frame = -2
Query: 283 RFRSQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVEPPAHIRPDASS*VSARKSVDES 104
RF S+ H HS PP ++ A P R N + + P +S A + +
Sbjct: 321 RFHSKIHTHSTPPSQMYSAASHFRYRSDPSTRHVSNSTNKSSLHPSPTSLRVAHPIIPQR 380
Query: 103 IALYCRGFP 77
+ + FP
Sbjct: 381 ASPASQSFP 389
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = -2
Query: 454 RHFRGRGEHLPKARPAGLERVPVVSHRSPSQ--LKRVALVEIQARRLLLWHRGYGI 293
R ++ RG HL K P G+ V+H PS+ L+ E R + H G GI
Sbjct: 133 RAYQSRGHHLAKLDPLGIN----VNHNRPSELTLEHYGFTESDLNRTI--HLGPGI 182
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 553 PGSATSAPQGHTAARRALNPAPVNQVEHFSPANTAAG 663
PGS S+P RA +P+ V Q + F+ AG
Sbjct: 103 PGSGRSSPLYTQPRSRATSPSRVRQADRFAAPGIGAG 139
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 324 VCFYGIEAMEFNVCASDPSTISTRIRRFQ 238
VCF+ +EA+ C+ P +ST + F+
Sbjct: 569 VCFWLVEALAMAGCSGYPKLLSTAVSMFE 597
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 708 GPEYVFGHLHRRVLDTGCCVRR*KVFH 628
G +F HLH R++ T CC ++H
Sbjct: 270 GDSQLFLHLHSRIVQTLCCFSLNFIYH 296
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.5
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Frame = -2
Query: 292 QRVRFRSQHHLHSNPPFSIFPTAPPANQFYSPRRRSFLNVEPPAHIRPDASS*V-SARKS 116
+R + SQ L+ P P + S +R +NV PP ++RP A S + R+S
Sbjct: 542 RRKAYTSQQ-LNPAPTAMPHPNITSPSPSISVTQRPAVNVGPPPYVRPSAPSKLPDTRQS 600
Query: 115 VDE-----SIALYCRGFPRS*RSSENAVSSARLESVPRSHR 8
+ + ++A G P S RSS +++ +S SH+
Sbjct: 601 IGDPLPPGAMANVSAG-PSSVRSSSYNSTASESKSEITSHQ 640
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 4.7
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
Frame = -2
Query: 364 QLKRVALVEIQARRLLLWHRGYGIQRVRFRSQHHLHSNPPFSIFPTAPPANQFYSPRRRS 185
+L V + ARR L + + V HHL S S P + A++ SP
Sbjct: 328 ELHTAGNVNLSARRALFEKKESSTKNVENPVSHHLKSPVRTSFPPASTTASKQDSPSTVP 387
Query: 184 FLNVEPPAHIRPDASS-*VSARKSVDESIALYCRGFPRS*RSSEN 53
E I SS SA++ ES+A F ++ S N
Sbjct: 388 VDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANVSENN 432
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.2
Identities = 29/116 (25%), Positives = 46/116 (39%)
Frame = -1
Query: 512 TSSAAAVGGDVTSCTLT*EPSFSRTR*TPSEGTSSWA*ACTRGFSPFTESAEACCSSRDT 333
++S G T T T P+ + + TP S+ + + SP ++ +C +S T
Sbjct: 342 STSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSS--SPLLSTSTSCTTS--T 397
Query: 332 SSPFAFMASRLWNSTCALPIPAPSPLESAVFNFSNCSTGKSVLFSEASFVSEC*AT 165
S P NST + P S +NC+T SV ++ S AT
Sbjct: 398 SIP------PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLAT 447
Score = 25.4 bits (53), Expect = 8.2
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Frame = -1
Query: 479 TSCTLT*EPSFSRTR*TPSEGTSSWA*ACTRGFS-PFTE----SAEACCSSRDTSSPFAF 315
T+CT + ++ T T + T++ CT S P+T S ++ TS+ +
Sbjct: 448 TNCTTSTSVPYTSTPVTSTPLTTT---NCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPY 504
Query: 314 MASRLWNSTCALPIPAPSPLESAVFNFSNCSTGKSVLFSEASFVSEC*AT 165
++ + +S I + +P+ S +NC+T SVL++ S AT
Sbjct: 505 TSTPVTSSNYT--ISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLAT 552
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.126 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,137
Number of Sequences: 5004
Number of extensions: 57220
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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