Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_N04
         (791 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    25   0.92 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    23   2.8  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   3.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.7  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   3.7  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 516 SYTLSQGPIEFIKIRSRWMEFI*I-PVIRIHKSFIVRSYCDYLS 388
           SY LS+  I F+K+  +   F+ I P        I+   CD +S
Sbjct: 2   SYRLSRNDIRFLKVMYKLSHFLSITPNYDFENFVIISPRCDKIS 45


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 219 PFVTSRDDFYSVHYIFCCSNSTMFICYSEHRSEHPKRCVRLR 344
           PF+ S     S+ ++F C+   M  C     S+  K   +LR
Sbjct: 234 PFLISNISLVSLIFLFNCTLIIMCDCVRSEASKVVKNAQKLR 275


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 304 NIDPNTLRDVFGYGSTYSP 360
           N + N L + +GYG+ Y P
Sbjct: 69  NYNSNVLSNGYGYGNYYHP 87


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 304 NIDPNTLRDVFGYGSTYSP 360
           N + N L + +GYG+ Y P
Sbjct: 69  NYNSNVLSNGYGYGNYYHP 87


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 304 NIDPNTLRDVFGYGSTYSP 360
           N + N L + +GYG+ Y P
Sbjct: 69  NYNSNVLSNGYGYGNYYHP 87


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 304 NIDPNTLRDVFGYGSTYSP 360
           N + N L + +GYG+ Y P
Sbjct: 69  NYNSNVLSNGYGYGNYYHP 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,121
Number of Sequences: 336
Number of extensions: 4190
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)