Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_N03
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1029 - 21835441-21835856,21836666-21836852                       29   2.2  
10_08_0210 - 15874289-15875663,15878248-15879263                       28   3.8  
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446...    28   3.8  
01_06_0784 + 31979670-31979976,31980092-31980337,31980428-319805...    27   5.0  
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    27   8.7  
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    27   8.7  
01_06_1608 - 38612754-38616947,38617030-38617095                       27   8.7  

>04_03_1029 - 21835441-21835856,21836666-21836852
          Length = 200

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +1

Query: 1   EVSITIRLH*EN*KGYLKLLSVFNLXFIYLRPHDVGRP-WSPHEVPLHVLSEGRSVPI*I 177
           E+ I ++LH      Y++  +  N   + +     G P   P    +H L  G  VP+ +
Sbjct: 13  EIEIQVQLHISGALDYMRPNT--NGSLVGMVKMTTGNPRCPPQNQNIHSLRSGHRVPVDV 70

Query: 178 LPPESVALA 204
           LPP+   LA
Sbjct: 71  LPPDGKLLA 79


>10_08_0210 - 15874289-15875663,15878248-15879263
          Length = 796

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 91  RPHDVGRPWSPHEVPLHVLSEGRSVPI*ILPP 186
           RP D   PW PH +    LS+  +  + ++PP
Sbjct: 601 RPSDADNPWRPHYLVSRTLSQYCAYLLWLVPP 632


>03_03_0186 +
           15243150-15243563,15243685-15243777,15244604-15244666,
           15245028-15245114,15245197-15245349,15245422-15245579,
           15246458-15246692,15246782-15246892,15246942-15246968,
           15247269-15248327,15248432-15248692,15249011-15249196,
           15249642-15250793,15250886-15251236,15251343-15251738
          Length = 1581

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 269 SPENVSKWAEIRRKEAAE 322
           +PE + KW +I+RKEA E
Sbjct: 225 NPELIKKWTKIKRKEAKE 242


>01_06_0784 +
           31979670-31979976,31980092-31980337,31980428-31980544,
           31980638-31980792,31980910-31980984,31981080-31981346,
           31981436-31981756,31981858-31982271
          Length = 633

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 256 VNFVEEW*GNYDGGSPVTPEPQILE 182
           ++F+++W G+ D  SP  PEP   E
Sbjct: 576 LDFMDDWNGDADRPSPTAPEPAAQE 600


>11_06_0223 -
           21419128-21419397,21419493-21419747,21420243-21420414,
           21420530-21420757,21420916-21421049,21421309-21421392,
           21421554-21421760,21421871-21422203,21422343-21422449,
           21422823-21422988,21423127-21423230,21423347-21423507,
           21423595-21424495,21424642-21424732,21424837-21425127,
           21425491-21425575,21425665-21425747,21427653-21427773,
           21427785-21428260
          Length = 1422

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 194 WLWRYWAAAIVISSPLFYKIHKMSNSPENVSKWA 295
           W+W YWA      SP+ Y    +S +    S+WA
Sbjct: 743 WIWGYWA------SPMMYSQQAISINEFLASRWA 770


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 95   LTMSDA-PGRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNS 271
            +TMSD   G+     Y   A V  F Y   L +    + WAA+I  + PL  +     N 
Sbjct: 1176 ITMSDLLAGKSSLEDYRGIAFVGGFSYADVLDSA---KGWAASIRFNQPLIQQFQNFYNR 1232

Query: 272  PENVS 286
            P+  S
Sbjct: 1233 PDTFS 1237


>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 95   LTMSDA-PGRPMKFPYTFSAKVAQFPYKFYLQNLWLWRYWAAAIVISSPLFYKIHKMSNS 271
            +TMSD   G+     Y   A V  F Y   L +    + WAA+I  + PL  +     N 
Sbjct: 1180 ITMSDLLAGKSSLEEYRGIAFVGGFSYADVLDSA---KGWAASIRFNQPLIQQFQNFYNR 1236

Query: 272  PENVS 286
            P+  S
Sbjct: 1237 PDTFS 1241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,045,862
Number of Sequences: 37544
Number of extensions: 232244
Number of successful extensions: 620
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)