Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_N03
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.039
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   4.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.039
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 260 FCEFCRRVVRKLRWRQPSNARATDSGGKIYMGTERPSLRTCKGTS 126
           FC+  +R + K++WR+P  A   +     Y+  E  +LRT  G S
Sbjct: 24  FCQPTQRTMSKIQWRKPKPAMVEEKTQLRYL-EELNALRTELGAS 67


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 71   IXSSFTYALTMSDAPGRPMKFPYTFSAKVAQF 166
            + ++ TY  T  D PG P       S+  A F
Sbjct: 1200 VPTTVTYCQTEEDVPGSPADIKVVVSSPQALF 1231


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 71   IXSSFTYALTMSDAPGRPMKFPYTFSAKVAQF 166
            + ++ TY  T  D PG P       S+  A F
Sbjct: 1196 VPTTVTYCQTEEDVPGSPADIKVVVSSPQALF 1227


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 6   FDYDQTSLRKLKRLSQIIKCFQSXLHLLTPSRCR 107
           F+  Q  +R  K ++Q I C Q  +   T S CR
Sbjct: 610 FNCTQYQIRDHKDVTQCISCRQGTVPDETHSACR 643


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 175 ILPPESVALALLG 213
           I+PP S+A+ LLG
Sbjct: 301 IIPPTSLAIPLLG 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,968
Number of Sequences: 438
Number of extensions: 2323
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)