Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_N02
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   1.2  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   2.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.8  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   6.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +1

Query: 361 CPICYNDH*EERCGAKGQH*NQK*GSLCDVTQCGS-QKRTGHVCLH 495
           CP C      ER G  G H  +K    C +  CG    +T H+  H
Sbjct: 293 CPNCQE---AERLGPAGVHLRKKNIHSCHIPGCGKVYGKTSHLKAH 335


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +3

Query: 288 YSNTSVLLLTSKWWTLTQRWTMMMMS 365
           + +   ++++  W T+ + W+ M MS
Sbjct: 127 FGSIQFIIISKHWVTIMKEWSFMEMS 152


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 273 PMHSGPIPPPGSM 235
           P+ S P PPPGS+
Sbjct: 207 PVPSTPYPPPGSL 219


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 524 QRQGKIYSSVCKHTC 480
           Q  GK+ +S+CK+ C
Sbjct: 516 QTGGKVETSICKNFC 530


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,528
Number of Sequences: 336
Number of extensions: 4131
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)