Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_N02
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 188 6e-49
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 140 2e-34
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 56 4e-09
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 33 0.061
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 27 3.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.3
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 26 7.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 7.0
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 9.3
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 25 9.3
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 9.3
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 188 bits (459), Expect = 6e-49
Identities = 96/201 (47%), Positives = 129/201 (64%), Gaps = 4/201 (1%)
Frame = +2
Query: 176 VIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDND 355
++RK +YGG++ VT++PG GIG E V +IFK PI+FE +D+ N+
Sbjct: 5 LVRKSSAFQPLKYGGKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNN 64
Query: 356 ----DDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGV 523
D + AI ++KRN VGLKG + T E TS NVALR ELD+YA ++ K+ PG
Sbjct: 65 KSSGDALHEAIQSLKRNKVGLKGILFTPFEKGGHTSFNVALRKELDIYASLVLIKNIPGF 124
Query: 524 ATRHKDIDVVIIRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVXXXXXXXXXKNGRX 703
TRH ++D IIR+NTEGEY+ LEH+SV GVVES+K++T S+R+ +NGR
Sbjct: 125 KTRHDNVDFAIIRENTEGEYSGLEHQSVPGVVESLKIITEYKSKRIAQFAFDFALQNGRK 184
Query: 704 KVTTVHKANIMKLSDGLFLET 766
VT +HKANIMKL+DGLF T
Sbjct: 185 SVTCIHKANIMKLADGLFRRT 205
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 140 bits (340), Expect = 2e-34
Identities = 75/190 (39%), Positives = 111/190 (58%), Gaps = 2/190 (1%)
Frame = +2
Query: 218 GRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDV--QYAITTIKR 391
G + VTM+ G GIGPE V IFK PI++E V + P + N A ++++
Sbjct: 44 GNYTVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIPDDAKESVRK 103
Query: 392 NGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNT 571
N V LKG + T +V S N+ LR ++A + C S G T + +++ V+IR+NT
Sbjct: 104 NKVALKGPLATPIGKGHV-SMNLTLRRTFGLFANVRPCVSITGYKTPYDNVNTVLIRENT 162
Query: 572 EGEYAMLEHESVNGVVESMKVVTADNSERVXXXXXXXXXKNGRXKVTTVHKANIMKLSDG 751
EGEY+ +EHE + GVV+S+K++T SERV + G+ +T VHKA IM+++DG
Sbjct: 163 EGEYSGIEHEVIPGVVQSIKLITRAASERVIRYAFQYARQTGKNNITVVHKATIMRMADG 222
Query: 752 LFLETSXRLA 781
LFLE + LA
Sbjct: 223 LFLECAKELA 232
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 56.4 bits (130), Expect = 4e-09
Identities = 51/207 (24%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Frame = +2
Query: 221 RHAVTMLPGGGIGPECMGYVRDIFKYIGAP--IDFEVVDIDPTMDNDDDVQYAIT--TIK 388
R + ++P GIG E + R + + + A + F+ +D+D + A+ T++
Sbjct: 6 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVE 65
Query: 389 RN----GVGLKGNIETKS-EAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVV 553
R L G +++ + + A +S VALR ++ +YA + KS G + K +D+V
Sbjct: 66 RLKTECNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGA--KGKPVDLV 123
Query: 554 IIRQNTEGEYA----MLEHESVNGVVESMKVVTADNSERVXXXXXXXXXKNGRXK----- 706
I+R+NTE Y M+++ V E+++ ++ + S ++ + +
Sbjct: 124 IVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTY 183
Query: 707 -------VTTVHKANIMKLSDGLFLET 766
VT +HK+N+M ++DGLF E+
Sbjct: 184 SIHKKPLVTIIHKSNVMSVTDGLFRES 210
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 32.7 bits (71), Expect = 0.061
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 344 MDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYI 496
M +DD VQY I +K G+ L +++T E + + R + D+Y Y+
Sbjct: 685 MKHDDLVQYVINNVKDRGIPLVSDVKTAIEK--LLEKEYLEREDNDIYTYV 733
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 3.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 392 NGVGLKGNIETKSEAAYVTSRNVA--LRNELDMYAYILNCKSYPGVATRHKDID 547
N VGL G + K A +T N+A L ++++ CK +P A K +D
Sbjct: 470 NVVGLAGAVGDKVPKAALTMNNIAYLLGIVTSFLSHLIICKIFPVTACGEKFLD 523
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 363 TSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPPGSMVTA 226
TS + SI+ ++ T+ S +P S P P+PPP + TA
Sbjct: 816 TSQASSILPTVPRTT-SYTSPYATTSSHITPADVHPLPPPSTSTTA 860
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 494 ILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESVNGVVESMKVVTADNSERV 661
I++C S G K +VIIR E+ + +E ++ S+ ++A +R+
Sbjct: 117 IISCHSMHGPKVNPKSQPLVIIRHRASDEHFEIVNEILSCFKSSVVYLSAKEHDRI 172
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 681 NSKANXATLSELSAVTTFIDSTTPFTDSCSNIAYSPS 571
NS + ++ S+ + TT+ D TT T S+I SP+
Sbjct: 689 NSTGSSSSDSQSFSGTTYSDPTTTITSEVSSILSSPT 725
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 467 RNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGE-----YAMLEHESVNGVVES 625
R+ELD + Y + SY + HK+ ++I ++ G+ Y M SV +++S
Sbjct: 136 RDELDPHLYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQALIQS 193
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -1
Query: 426 LVSMLPFSPTPFLLMVV----IAYWTSSSLSIVGSMSTT 322
L ML P+PF ++ + YW SSL+I+G + ++
Sbjct: 38 LTKMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSS 76
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 388 LNGRYSILDIIIIVHRWVNVHHFEVNRSTDVFEY 287
L+G+ S ++I+ + +W +VH +V R + Y
Sbjct: 356 LDGKSSKQELIMALQQWASVHGRQVTRPVLIASY 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,015
Number of Sequences: 5004
Number of extensions: 66388
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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