Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_N02
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    25   0.60 
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    25   0.60 
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    25   0.60 
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    25   0.60 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.4  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 545 DVVIIRQNTEGEYAMLEHESVNGVVESMKVV 637
           DV++IR+  EG   + E E +  V+  +  +
Sbjct: 148 DVIVIRRTGEGSKPLFEREEIKNVLTKINKI 178


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 545 DVVIIRQNTEGEYAMLEHESVNGVVESMKVV 637
           DV++IR+  EG   + E E +  V+  +  +
Sbjct: 159 DVIVIRRTGEGSKPLFEREEIKNVLTKINKI 189


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 545 DVVIIRQNTEGEYAMLEHESVNGVVESMKVV 637
           DV++IR+  EG   + E E +  V+  +  +
Sbjct: 159 DVIVIRRTGEGSKPLFEREEIKNVLTKINKI 189


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 545 DVVIIRQNTEGEYAMLEHESVNGVVESMKVV 637
           DV++IR+  EG   + E E +  V+  +  +
Sbjct: 148 DVIVIRRTGEGSKPLFEREEIKNVLTKINKI 178


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 338 PTMDNDDDVQYAITTIKRNGVGLKGNIETKSEA 436
           P  D D++ +  +  + RNG G+ G +    EA
Sbjct: 354 PKKDEDEEEEEEVVVVGRNGAGV-GAMNANGEA 385


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/21 (38%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 455 NVALRNELDM-YAYILNCKSY 514
           + +L N+ +  ++Y+LNCK+Y
Sbjct: 18  SASLENDNEFGFSYLLNCKNY 38


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +2

Query: 398 VGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVAT 529
           +G+   +  K     +  R +  +NE D   +++   S PGV +
Sbjct: 147 IGIVKTVAKKLHGTDIEMRILKTKNECDHVQFLITNTSGPGVVS 190


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +2

Query: 398 VGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVAT 529
           +G+   +  K     +  R +  +NE D   +++   S PGV +
Sbjct: 147 IGIVKTVAKKLHGTDIEMRILKTKNECDHVQFLITNTSGPGVVS 190


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 586 YVGTRIREWCGRV 624
           Y+ TR+  WC RV
Sbjct: 332 YMQTRVPAWCDRV 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,720
Number of Sequences: 438
Number of extensions: 4589
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)