Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M22
(765 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.19
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.19
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.33
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.33
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.58
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 1.0
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 1.8
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 3.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 5.4
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 5.4
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 7.2
DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein. 21 9.5
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 9.5
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.19
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 698 HVDIPYNILXTDKPLFYTNNII 763
++DI +NI K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.1 bits (57), Expect = 0.19
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 698 HVDIPYNILXTDKPLFYTNNII 763
++DI +NI K LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 692 PSHVDIPYNILXTDKPLFYTNNII 763
P+ DI + I+ K LFYT N+I
Sbjct: 218 PTETDITFYIIIRRKTLFYTVNLI 241
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.2 bits (55), Expect = 0.33
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 698 HVDIPYNILXTDKPLFYTNNII 763
++DI +NI K LFYT N+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLI 248
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.58
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 680 PXRAPSHVDIPYNILXTDKPLFYTNNII 763
P + DI +NI K LFYT N+I
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLI 257
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 24.6 bits (51), Expect = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 704 DIPYNILXTDKPLFYTNNII 763
DI +NI K LFYT N+I
Sbjct: 225 DIVFNITLRRKTLFYTVNLI 244
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 704 DIPYNILXTDKPLFYTNNII 763
DI +NI K LFYT N+I
Sbjct: 224 DIFFNITLRRKTLFYTVNLI 243
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 704 DIPYNILXTDKPLFYTNNII 763
DI Y I +P+FY N+I
Sbjct: 202 DITYEIRLRRRPMFYVFNLI 221
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/34 (23%), Positives = 15/34 (44%)
Frame = +3
Query: 489 IPYAAFLKKVMA*KTSQLVISLVIRSFPATNVRW 590
+PY + KV A L + + +P ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 22.2 bits (45), Expect = 5.4
Identities = 8/34 (23%), Positives = 15/34 (44%)
Frame = +3
Query: 489 IPYAAFLKKVMA*KTSQLVISLVIRSFPATNVRW 590
+PY + KV A L + + +P ++W
Sbjct: 519 LPYIRLIPKVTAVAGETLRLKCPVAGYPIEEIKW 552
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.8 bits (44), Expect = 7.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 506 PEEGHGVEDITTRHIFSYKILS 571
P EG + D RHI IL+
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385
>DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein.
Length = 135
Score = 21.4 bits (43), Expect = 9.5
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -1
Query: 360 SCHTASDIPGNLHTLPGLCLSLLG 289
S T ++ LHT+ +C+ +G
Sbjct: 15 SAMTLDELKSGLHTVQSVCMKEIG 38
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.4 bits (43), Expect = 9.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 235 QRRRARSCSHSKSSFPSTAKQRKTKTRER 321
+R+R S ++S S A KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,959
Number of Sequences: 438
Number of extensions: 3378
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -