Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M21
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.9  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    27   3.4  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   4.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   7.8  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   7.8  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   7.8  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   7.8  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/86 (24%), Positives = 39/86 (45%)
 Frame = +3

Query: 93  LIFVTIWIVFSKSATESTKQQLSAVAILLSSAELVLLIGQFPTLSTNIVMLKTVSWNFFK 272
           L+ + I  V+S +A E   Q++  +  LL+   LV+ +          ++     W    
Sbjct: 94  LLAMQIMFVYSPNAPERVTQRI--ICFLLAIDVLVVFLSP--------ILRHREGWRSNA 143

Query: 273 FLLWYCILIIAFALSFYTLFRQENEE 350
           F+LW  ++ +   ++   LFRQ  EE
Sbjct: 144 FVLWAFLMSLWIVITDLMLFRQYKEE 169


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +3

Query: 672 SAKTHSRPSKCWSLLPFNIQNLNLIKPKTFFMKSFAKRICLFPHFLPKYKILVKPI 839
           SA+T    +KC  ++ F I  ++L      + +   KR  LFP+F P    L +PI
Sbjct: 68  SARTFRNLTKCAKVVNFCIL-ISLFNVFLVWSR-LEKRAALFPYFTPAQAFLSQPI 121


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 643 INLIREICPTNSASALISCVSLTARPLSKL 554
           I+ +  +CP     A+IS +  TA PLS++
Sbjct: 337 ISSVHNVCPKGYYLAIISTIVETANPLSEI 366


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
 Frame = +3

Query: 78  WM-EIGLIFVTIWIVFSKSATESTKQQLSAV--AILLSSAELV-------LLIGQFPTLS 227
           W+  + + F T W++FS   T+  K + S     ILL    L        ++I  F T  
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRL 181

Query: 228 TNIVMLKTVSWNFFKFLLWYCILIIAFALSFYTLFR 335
              ++L T+      F+ W   + + F +    L+R
Sbjct: 182 NKKIILNTI---VTSFICWSNAIALGFCIIACILWR 214


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
 Frame = +3

Query: 78  WM-EIGLIFVTIWIVFSKSATESTKQQLSAV--AILLSSAELV-------LLIGQFPTLS 227
           W+  + + F T W++FS   T+  K + S     ILL    L        ++I  F T  
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRL 181

Query: 228 TNIVMLKTVSWNFFKFLLWYCILIIAFALSFYTLFR 335
              ++L T+      F+ W   + + F +    L+R
Sbjct: 182 NKKIILNTI---VTSFICWSNAIALGFCIIACILWR 214


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
 Frame = +3

Query: 78  WM-EIGLIFVTIWIVFSKSATESTKQQLSAV--AILLSSAELV-------LLIGQFPTLS 227
           W+  + + F T W++FS   T+  K + S     ILL    L        ++I  F T  
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRL 181

Query: 228 TNIVMLKTVSWNFFKFLLWYCILIIAFALSFYTLFR 335
              ++L T+      F+ W   + + F +    L+R
Sbjct: 182 NKKIILNTI---VTSFICWSNAIALGFCIIACILWR 214


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
 Frame = +3

Query: 78  WM-EIGLIFVTIWIVFSKSATESTKQQLSAV--AILLSSAELV-------LLIGQFPTLS 227
           W+  + + F T W++FS   T+  K + S     ILL    L        ++I  F T  
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKIEFSTFLPTILLPIVPLTVAASTGSVVIETFSTRL 181

Query: 228 TNIVMLKTVSWNFFKFLLWYCILIIAFALSFYTLFR 335
              ++L T+      F+ W   + + F +    L+R
Sbjct: 182 NKKIILNTI---VTSFICWSNAIALGFCIIACILWR 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,959
Number of Sequences: 5004
Number of extensions: 64472
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)