Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M21
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894...    30   2.0  
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541...    28   8.3  

>03_06_0184 -
           32188778-32188947,32189104-32189173,32189332-32189473,
           32189559-32189739,32189857-32190051,32190782-32190795,
           32190815-32190864,32191493-32191519
          Length = 282

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/39 (30%), Positives = 27/39 (69%)
 Frame = +3

Query: 198 LLIGQFPTLSTNIVMLKTVSWNFFKFLLWYCILIIAFAL 314
           +L+ +   +S++++ L T  W FF++L ++ + I++FAL
Sbjct: 99  VLLWRNKKISSSVLALATAIWVFFEWLDYHFLTIVSFAL 137


>01_06_0561 +
           30251547-30252173,30252248-30252405,30253250-30254192,
           30254271-30254438,30254546-30254857,30255498-30255557,
           30255905-30255937,30256083-30256271
          Length = 829

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 582 DTQEIRAD-AELVGHISRIKLISYIESVLIGSAKTHSRPSKCWSL 713
           D + IRA    LVGH   +  + Y+++  I SA T     K W L
Sbjct: 671 DLRNIRAPYCTLVGHTKTVSYVKYVDASTIVSAST-DNSLKLWDL 714


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,727,750
Number of Sequences: 37544
Number of extensions: 359686
Number of successful extensions: 743
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)