Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M21
(855 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 52 7e-07
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 52 7e-07
AF040641-5|AAB94944.1| 379|Caenorhabditis elegans Hypothetical ... 32 0.60
AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf (d... 31 0.79
Z50109-5|CAA90438.1| 325|Caenorhabditis elegans Hypothetical pr... 30 1.8
AC084153-13|AAK84583.1| 123|Caenorhabditis elegans Hypothetical... 30 1.8
U23525-5|AAC46568.1| 465|Caenorhabditis elegans Yeast smf (diva... 29 3.2
U97552-1|AAB52866.2| 109|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL023856-6|CAC15864.1| 332|Caenorhabditis elegans Hypothetical ... 29 4.2
Z78064-3|CAB01512.1| 157|Caenorhabditis elegans Hypothetical pr... 29 5.6
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 5.6
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical protein
C29E6.2 protein.
Length = 1193
Score = 51.6 bits (118), Expect = 7e-07
Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 19/231 (8%)
Frame = +3
Query: 30 FQLLLSPTRYLQSIENWMEIGLI---FVTIWIVFSKSATESTKQQ----LSAVAILLSSA 188
FQL YL + ENW++ + +T++ SAT +Q L+A+ I
Sbjct: 870 FQLFQRKFAYLVNWENWIDCFIYSTALITVYDFSECSATSGVRQNWQWILAALCIFFGWI 929
Query: 189 ELVLLIGQFPTLSTNIVMLKTVSWNFFKFLLWYCILIIAFALSFYTLFRQENEEDQRAPD 368
L+ +I + P +VM + FF+F + + IIAF+ SFY + Q P+
Sbjct: 930 NLLFMIRKMPRFGIFVVMFVDIVKTFFRFFPVFVLFIIAFSSSFYVIL-------QNRPE 982
Query: 369 PNTAGKXXXXXXXXXXPGRSLFKTIVMLTGEFDASSIKFSTYPLTSHXXXXXXXXXXXXX 548
+T S KT VM+ GEF+ + I +
Sbjct: 983 FSTI-------------FMSPLKTTVMMIGEFEFTGIFHGDETTHAEKMFGPAHTAVACA 1029
Query: 549 LF------------NLLNGLAVSDTQEIRADAELVGHISRIKLISYIESVL 665
LF NLL GLAV D + ++ AEL ++ L+ IE+ L
Sbjct: 1030 LFFFFCIIMTILLMNLLVGLAVDDIKGVQEKAELKRLAMQVDLVLQIEASL 1080
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient receptor
potential subfamilyA-1 protein.
Length = 1206
Score = 51.6 bits (118), Expect = 7e-07
Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 19/231 (8%)
Frame = +3
Query: 30 FQLLLSPTRYLQSIENWMEIGLI---FVTIWIVFSKSATESTKQQ----LSAVAILLSSA 188
FQL YL + ENW++ + +T++ SAT +Q L+A+ I
Sbjct: 883 FQLFQRKFAYLVNWENWIDCFIYSTALITVYDFSECSATSGVRQNWQWILAALCIFFGWI 942
Query: 189 ELVLLIGQFPTLSTNIVMLKTVSWNFFKFLLWYCILIIAFALSFYTLFRQENEEDQRAPD 368
L+ +I + P +VM + FF+F + + IIAF+ SFY + Q P+
Sbjct: 943 NLLFMIRKMPRFGIFVVMFVDIVKTFFRFFPVFVLFIIAFSSSFYVIL-------QNRPE 995
Query: 369 PNTAGKXXXXXXXXXXPGRSLFKTIVMLTGEFDASSIKFSTYPLTSHXXXXXXXXXXXXX 548
+T S KT VM+ GEF+ + I +
Sbjct: 996 FSTI-------------FMSPLKTTVMMIGEFEFTGIFHGDETTHAEKMFGPAHTAVACA 1042
Query: 549 LF------------NLLNGLAVSDTQEIRADAELVGHISRIKLISYIESVL 665
LF NLL GLAV D + ++ AEL ++ L+ IE+ L
Sbjct: 1043 LFFFFCIIMTILLMNLLVGLAVDDIKGVQEKAELKRLAMQVDLVLQIEASL 1093
>AF040641-5|AAB94944.1| 379|Caenorhabditis elegans Hypothetical
protein D1069.4 protein.
Length = 379
Score = 31.9 bits (69), Expect = 0.60
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Frame = +3
Query: 51 TRYLQSIENWMEIGLIFVTIWIVFSKSATESTKQQLSAVAILLSS-AELVLLIGQ-FPTL 224
+++LQ +W G++ V + IV + ++ + I S+ +E++ L GQ P
Sbjct: 143 SKWLQPRNSWQLFGVVSVVLSIVCLPTLVLHKIYEIESPEIETSTVSEVLRLSGQSIPKE 202
Query: 225 STNIVMLKTVSWNFFKFLLWY---------CILIIAFALSFYTLFRQENEE 350
+ T S FFKF LW C L++ F ++ RQ +E+
Sbjct: 203 VRYSLNFSTYSCAFFKFNLWMLAIVLKAIPCALLLWFTIALVVKLRQTDEK 253
>AC084158-29|AAL27264.2| 666|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 3 protein.
Length = 666
Score = 31.5 bits (68), Expect = 0.79
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +3
Query: 102 VTIWIVFSKSATESTKQQLSAVAI---LLSSAELVLLIGQFPTLSTNIVMLKTVSWNFFK 272
+ +W++ + S Q++ AI LLS+ + L G T+ L + K
Sbjct: 227 LVLWMLVESAIVGSDMQEVIGTAISFYLLSNGVIPLWAGVLITICDTFTFLFLEKYGVRK 286
Query: 273 FLLWYCILIIAFALSF 320
F ++C LI A++F
Sbjct: 287 FEAFFCFLITCMAITF 302
>Z50109-5|CAA90438.1| 325|Caenorhabditis elegans Hypothetical
protein C09H10.7 protein.
Length = 325
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 437 DHRHVNWRIRCIFHKIQYISLNESHYIH 520
D +H ++ + C HK+Q+ISL + H+ H
Sbjct: 95 DTKHRDYLVVCGEHKLQFISLPDYHFYH 122
>AC084153-13|AAK84583.1| 123|Caenorhabditis elegans Hypothetical
protein Y22D7AL.1 protein.
Length = 123
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +3
Query: 156 LSAVAILLSSAELVLLIGQFPTLSTNIVMLKTVSWNFFKFLLWYCILIIAFALSFYTLF 332
++ IL+ L+ + + PT + + L+ W FF F + I++I F + +Y+ +
Sbjct: 43 IAVFIILVIIIVLIFVFRKMPTPTESSSTLRKTLWWFFIFYVLLKIVVIVFIIGYYSKY 101
>U23525-5|AAC46568.1| 465|Caenorhabditis elegans Yeast smf
(divalent cation transporter)homolog protein 2 protein.
Length = 465
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = +3
Query: 102 VTIWIVFSKSATESTKQQL--SAVAI-LLSSAELVLLIGQFPTLSTNIVMLKTVSWNFFK 272
+ +W++ + S Q++ +A+AI LLSS ++ LL+G T+ L + K
Sbjct: 68 IILWLMIEIAIVCSDMQEVIGTAIAIYLLSSGKIPLLVGVLITILDTFTFLFIDRYGIRK 127
Query: 273 FLLWYCILIIAFALSF 320
+ LI A+SF
Sbjct: 128 LEFIFVALISTMAISF 143
>U97552-1|AAB52866.2| 109|Caenorhabditis elegans Hypothetical
protein W05H7.2 protein.
Length = 109
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 248 NGFVEFLQIFTLVLHSHNSFCVK 316
N F+ FLQ F+ H + FC+K
Sbjct: 23 NFFLHFLQFFSFFFHDYRLFCIK 45
>AL023856-6|CAC15864.1| 332|Caenorhabditis elegans Hypothetical
protein Y94A7B.9 protein.
Length = 332
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 150 QQLSAVAILLSSAELVL-LIGQFPTLSTNIVMLKTVSWNFFKFLLWYCILIIAFALSFYT 326
Q S + + S+ L + + G + L V +K+V W+ F LW L I+ +L
Sbjct: 10 QVYSNILYITSAFSLPIHIFGGYCILYRTTVFMKSVKWSLFNLYLWSFALDISLSLFIQP 69
Query: 327 LF 332
F
Sbjct: 70 YF 71
>Z78064-3|CAB01512.1| 157|Caenorhabditis elegans Hypothetical
protein F57B1.5 protein.
Length = 157
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Frame = +3
Query: 42 LSPTRYLQSIENWMEIGLIFVTIWIVFSKSATESTKQQLSAVAILLSSAEL-VLLIGQFP 218
+S + +L +I + + IG+ +++W + K + + + ILLS A + I
Sbjct: 43 ISGSNFLLAIYDILAIGIASISLWFIVQKFYWIKVESVFNIIGILLSLASISTSFITTLD 102
Query: 219 TLSTNIV--MLKTVSWNFFKFLLW 284
S + +L + W F F W
Sbjct: 103 PASIQSLTHILTLIIWIFSAFWAW 126
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 268 KKFHETVFNMTMLVDSVGNCPISRTNSADDNK-IATA 161
+K+ + N+ +D++GN P+ + + DDNK I TA
Sbjct: 549 EKYRPSYDNLPTWMDAIGNPPLVKYHMGDDNKTIVTA 585
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,057,781
Number of Sequences: 27780
Number of extensions: 355605
Number of successful extensions: 976
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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