Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M21
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    27   0.17 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   8.3  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 205 ISRTNSADDNKIATAESCCFVDSVADL-ENTIQIVTKIRPISIQF 74
           I  +N  D +K+   +S C +DS  D  E T   VT +R IS  F
Sbjct: 265 IGGSNGLDTSKVHIIDSICGIDSKPDYRELTEYSVTSVRLISSGF 309


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 490 VLNFMEDASNSPVNMTM 440
           + N +EDASN PV+ T+
Sbjct: 432 IANELEDASNIPVHATL 448


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +3

Query: 153 QLSAVAILLSSAELVLLIGQFPTLSTNIVMLKTVSWNFFKFLLWYCILIIAFALSFY 323
           QL  V    +    V   G F  L    V+ + + +  F   +  C+++I   +SF+
Sbjct: 211 QLQLVKNYTADCTQVYSTGNFTCLEVVFVLKRRLGYYLFHTYIPTCLIVIMSWVSFW 267



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 33  QLLLSPTRYLQSIENWMEIGLIFV 104
           Q  L P  YL++++ +M +  +FV
Sbjct: 295 QASLPPVSYLKAVDAFMSVCTVFV 318


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 33  QLLLSPTRYLQSIENWMEIGLIFV 104
           Q  L P  Y+++I+ WM    +FV
Sbjct: 264 QQSLPPVSYVKAIDVWMSSCSVFV 287


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 711 LLPFNIQNLNLIKPKTFFMKSFAKRICLFPHFL 809
           LL  N   +NL++P TF  K    R+ ++ + +
Sbjct: 621 LLFINNNYINLVRPNTFTDKVNLTRVDMYANMI 653


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = +3

Query: 207 GQFPTLSTNIVMLKTVSWNFFKFLLWYCILIIAFALSFY 323
           G++  L  +++  +  S+   +  +  C+L+I   +SF+
Sbjct: 226 GEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFW 264


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/39 (20%), Positives = 21/39 (53%)
 Frame = +3

Query: 207 GQFPTLSTNIVMLKTVSWNFFKFLLWYCILIIAFALSFY 323
           G++  L  +++  +  S+   +  +  C+L+I   +SF+
Sbjct: 226 GEYSCLKVDLLFKREFSYYLIQIYIPCCMLVIVSWVSFW 264


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 205 ISRTNSADDNKI--ATAESCCFVDSVADLENTIQIVTKIRPISIQFS 71
           +  T+  D ++I  AT ++C F+D++     ++  + + R +   FS
Sbjct: 97  VPNTSRLDKSEISLATKQACGFIDNIDKRNLSVTSMIQKRALGPSFS 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,096
Number of Sequences: 438
Number of extensions: 4233
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)