Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M17
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   8.2  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 269 VSKSLVIFERVRDFSLRLISY 207
           ++KSL   ++ RD SLR+I Y
Sbjct: 508 LNKSLKYSDKERDLSLRMILY 528


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 659 GSFSIKTSFLGACLIIDRVIPPGPG 585
           GS+ + T  +GA L++     PG G
Sbjct: 152 GSWEVYTKGIGAKLLLQMGFEPGKG 176


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -2

Query: 402 GHDYCCIFGGSSKSSRNVSCLMAKIE 325
           GH   C  GG  KS  +   ++ K+E
Sbjct: 294 GHTVRCFTGGPRKSHESQCPMLQKLE 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,044
Number of Sequences: 438
Number of extensions: 5281
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)