Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M15
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   2.8  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    27   4.8  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    26   6.4  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   8.5  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 227 RTGSSWSKIALFYFIFYSALAILVAICMWTFLQLLDARQPKWQLERSIIGTNPGLGFRP 403
           R  SS     ++Y I    L I  AICM+T   +  AR   W + R +      L FRP
Sbjct: 316 RNASSIIYTLMYYLIIAPTLLITSAICMFTIFFVPCAR-TLWAICRHLRTCPLSLSFRP 373


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 731  KDMPEDLKEHIRNMTAYDKNYLNMVWVSCQGEN 829
            KD  +DL +H   +TAYD N  N +  + + EN
Sbjct: 1103 KDSMKDLVQHAFTITAYDSNIHNALTRAFKHEN 1135


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 295 SRYLHVDVPPAFGR*ATQMAAREEHHWH*PRAGLQTNASGGRQQCH-LVQRK*PGQPTVL 471
           + Y+  ++P  +G         ++HH H P      NASG     H L +    G PTV+
Sbjct: 44  NEYVEPNIPAVYGSMIPVAQQLQQHHVHTPGESFADNASGYPVIKHELSELLRLGSPTVI 103


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 127 AIQHVLQGEGTTSNQIPKSETVHLEPEDQA 216
           ++  VL+G+G+T NQ P    +H    DQ+
Sbjct: 202 SLDDVLKGKGSTPNQKPSLSNLHENNIDQS 231


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 539 NIHN---CDFKLPPPAGKVCDVDISAWGPCVQDNYFGYHKST 655
           N+HN   C+F  P   G +   DI+    CV  + F  H ST
Sbjct: 165 NLHNATKCNFTFPTIQGSIHLSDINDSTICVSCHQFRLHHST 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,739,984
Number of Sequences: 5004
Number of extensions: 78725
Number of successful extensions: 199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)