Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M15
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    30   2.9  
11_01_0366 + 2793732-2793838,2793944-2794979                           29   6.7  
01_06_1151 + 34937738-34937855,34937959-34939244                       29   6.7  
04_03_0433 + 15878709-15878798,15879271-15879336,15880608-158807...    28   8.9  

>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 890 YPGSLGEVGTVWDQC 846
           YP  LG +G VWDQC
Sbjct: 91  YPSVLGTIGLVWDQC 105


>11_01_0366 + 2793732-2793838,2793944-2794979
          Length = 380

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 795 LTWFGFPAKARTXLIAXTLVPYSTYLTEASGV 890
           + W    AK     +A T++P+S YLT+A  V
Sbjct: 42  IPWANLRAKMDPAAVARTVIPHSEYLTQAKVV 73


>01_06_1151 + 34937738-34937855,34937959-34939244
          Length = 467

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +3

Query: 348 NGSSRGASLALTQGWASDQRLRRSPAVSSGTKEMTRAANSSGLKSYPPS*LRTSAM 515
           +GSS G+   +    A+  R R SP  S   +E+  +++S G   Y PS + +S+M
Sbjct: 152 DGSSYGSDNDVPTSAAASYRRRASPLTS---QELEASSSSMGSSGYQPSGVSSSSM 204


>04_03_0433 +
           15878709-15878798,15879271-15879336,15880608-15880743,
           15880813-15880900,15881674-15881826,15882214-15882376,
           15882446-15882630,15882696-15882869,15883222-15883367,
           15883498-15883621,15883702-15883882,15884986-15885145,
           15885235-15885276,15885349-15885467,15885548-15885746,
           15886263-15886394,15887546-15887649,15887750-15887929,
           15888202-15888249
          Length = 829

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/74 (22%), Positives = 30/74 (40%)
 Frame = -1

Query: 472 PELLAARVISFVPDDTAGDLRRRWSEAQPWVSANDAPLELPFGLPSVQKLEERPHADSD* 293
           P LL A++   +      D   +W    PWV+ N    +  FG   V ++  R +     
Sbjct: 123 PPLLRAQLGESIKTLILADYPEQWPSLLPWVTHNLESQDQIFGALYVLRILARKYEFKSE 182

Query: 292 DGECGVEDKIEQCY 251
           D    +   +E+C+
Sbjct: 183 DERIPLYQIVEECF 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,172,005
Number of Sequences: 37544
Number of extensions: 624862
Number of successful extensions: 1794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)