Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M12
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 31 0.26
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 29 0.81
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 29 0.81
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 3.3
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 4.3
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 4.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.7
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 26 5.7
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 7.5
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 7.5
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 25 10.0
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 10.0
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 25 10.0
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 30.7 bits (66), Expect = 0.26
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 317 VIEIIVEQGRHLTSLNLKGVWVKDEHLPLMYQLIKNLTNLTALNIPYIAND-EVLKYIGE 493
VI IV+ +L SLNL ++ D+ + +NL +L + I ND +L + +
Sbjct: 337 VINAIVDCCPNLISLNLSRIFYLDDECVRLLAGCRNLVSLKIESPGGIINDGSILDVLNQ 396
Query: 494 HNKVLKLLDVSGETDITE 547
L L +SG T +T+
Sbjct: 397 IGSGLHTLSLSGCTKLTD 414
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 29.1 bits (62), Expect = 0.81
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +2
Query: 281 ATGMFPVPYYRKVIEIIVEQGRHLTSLNLKGVWVKDEHLPLMYQLIKNLTNLTALNIPYI 460
A G+FPV Y ++V+E +EQ R + + V D LP + +L+ L+ + P
Sbjct: 260 AVGIFPVNYVQRVVEPTIEQQRQSAHMEQQ---VFDA-LPQIDELLDTLSTTS----PDA 311
Query: 461 ANDEVLKYIGEHNKVLKL 514
A+D+ L+ G+++ ++ L
Sbjct: 312 ADDDALQ--GKYHAMIAL 327
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 29.1 bits (62), Expect = 0.81
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Frame = +2
Query: 176 IFQDLINLILTSEYLDPSVRYYTMKLLLKENIKSLATGMFPVPYYRKV----IEIIVEQG 343
+ Q L +L+L+ + PS+ + LL ++ + P P V E+ E
Sbjct: 7 VHQSLRSLVLSYAHFSPSILIPASQYLLAAQLRDEFLSLHPAPSAESVEKEGAELEFEHE 66
Query: 344 RHLTSLNLKGVWVKDEHLPLMY-QLIKNLT 430
HL + L + K+E P Y QL++ +T
Sbjct: 67 LHLLAGFLGLIAAKEEETPGQYTQLLRIIT 96
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 458 IANDEVLKYIGEHNKVLKLLDVSGETDITEIGIDAM 565
+ ++LK I + + V K+ D+S +T + E+G+D++
Sbjct: 3255 VVEPKLLKIIADFSDV-KVTDISPQTSVFELGLDSI 3289
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 4.3
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 419 KNLTNLTALNIPYIANDEVLKYIGEH-NKVLKLLDVS--GETDITEIGIDAMLSGNPQLT 589
+NL + N+P + N L+ G+H + L++ S +T+ + G+D M GN QL
Sbjct: 532 ENLNGINESNMPMLQNGLPLRTSGDHPSNYSNLIENSSTSDTNNADNGMDVM--GNWQLQ 589
Query: 590 QS 595
Q+
Sbjct: 590 QT 591
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.6 bits (56), Expect = 4.3
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Frame = +2
Query: 527 GETDITEIGIDAMLSGNPQLTQSLTVIN----IGMYGEENIDHTDVALLIRRLPNLTNLG 694
G D I AM L LTV IGM G N D + V + +
Sbjct: 156 GTIDQWRSTITAMHERGMYLVVDLTVATLGDLIGMVGHLN-DTSGVDFNLNEYNAMWKTS 214
Query: 695 SYSFVGKSISHIYNTDCP-PNF 757
Y +V + +++YNT C P F
Sbjct: 215 EYRYVDFNFTNVYNTSCEYPRF 236
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 257 LKENIKSLATGMFPVPYYRKVIEIIVEQ 340
++EN K+L + F +Y K IEI V+Q
Sbjct: 644 IEENRKTLHSLQFGSTFYEKAIEICVDQ 671
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -3
Query: 548 FPLYRSLQKHQAVLVPYYVHRY 483
+PL+ ++ ++ VLVPY++H +
Sbjct: 314 YPLWVQVKLYEKVLVPYFLHDF 335
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 611 IGMYGEENI-DHTDVALLIRRLPNLTNLGSYSFVGKSISHI 730
I MYG + H D +L+++RL + N F+G+ + H+
Sbjct: 312 IFMYGSYILTSHPDNSLILQRLYSTNNELRIKFLGRLLGHV 352
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 593 SLTVINIGMYGEENIDHTDVALLIRRLPNLTNLGSYSFVGKSI-SHIYNTDCPPNFKTKL 769
S +V+ + + ++ H D+A+ LP TN+G +G +I S I++ P + L
Sbjct: 478 SFSVVGSQVSCQASVPHQDLAIASSLLPLYTNIG--GAIGAAIASPIFSNKVPKYLREYL 535
Query: 770 -QYIXDQQTNN 799
I D Q N
Sbjct: 536 PSSINDTQVYN 546
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 121 AIVRYGVLLLRKYGRYNRYL 180
AIV YG++L+R+ R ++YL
Sbjct: 365 AIVSYGIMLVRRDRRRHKYL 384
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 10.0
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 149 YESMGATTDIFQDLINLILTSEYLDPSVRYYTMKL-LLKENIKSLATGMFPVPYYRKVIE 325
YES+ + +I INL L L P+ +YY ++L LLK + + +P + +E
Sbjct: 329 YESI--SKEISPIAINLTLDCIRLIPTEQYYPLRLHLLKSLVNICRSTRLYIPLSSQFLE 386
Query: 326 II 331
+I
Sbjct: 387 MI 388
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 10.0
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 194 NLILTSEYLDPSVRYYTMKLLLKENIKSLATGMFPVPYYRKVIEIIVEQGRHLTSL 361
++I SE L P +Y + + + K +GMFPV Y ++ ++ V++ SL
Sbjct: 304 DVIQVSEQLGPD--WYMGEKVNSKAEKLGNSGMFPVNYCTRIYDLHVQKSHETRSL 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,788
Number of Sequences: 5004
Number of extensions: 60331
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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