Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M12
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0633 - 5484442-5484874,5485137-5485465 33 0.37
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521... 31 1.5
08_01_0624 - 5440405-5441071,5441931-5442265 30 2.0
02_05_1203 - 34934635-34934749,34934865-34934923,34935019-349351... 30 2.6
01_06_0888 + 32738275-32739567 29 4.5
09_02_0154 + 5055946-5058721,5058754-5058770 29 6.0
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755... 29 6.0
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 29 6.0
07_03_0601 - 19872780-19873099,19873148-19873151,19874196-198743... 28 7.9
06_03_0588 + 22567820-22570802,22570917-22571269 28 7.9
04_01_0038 + 446314-446787,446829-447350 28 7.9
>08_01_0633 - 5484442-5484874,5485137-5485465
Length = 253
Score = 32.7 bits (71), Expect = 0.37
Identities = 25/98 (25%), Positives = 47/98 (47%)
Frame = +2
Query: 455 YIANDEVLKYIGEHNKVLKLLDVSGETDITEIGIDAMLSGNPQLTQSLTVINIGMYGEEN 634
Y +DE+LKYIG + LK L + + ++ G+ +++ P L V+ G+ +
Sbjct: 97 YFVDDELLKYIGHRSPGLKSLCLDSCSMVSNTGLTQLMAMTPLLED--LVLRGGLDLSDE 154
Query: 635 IDHTDVALLIRRLPNLTNLGSYSFVGKSISHIYNTDCP 748
D V + +L + LGS K+++ ++ CP
Sbjct: 155 FDDPLVIPTMHQLRQIA-LGSLYISRKTLTKFVDS-CP 190
>11_06_0346 -
22549699-22549721,22549857-22549999,22550100-22552175,
22552305-22552822
Length = 919
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 344 RHLTSLNLKGVWVKDEHLPLMYQLIKNLTNLTALNIPY 457
+HL L+L+G W++ HLP + +K LT+L L+I +
Sbjct: 546 KHLKMLDLRGTWIR--HLP---EKVKELTSLERLDISH 578
>08_01_0624 - 5440405-5441071,5441931-5442265
Length = 333
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 485 IGEHNKVLKLLDVSGETDITEIGIDAMLSGNPQL 586
I E+ L+LL ++G ++TEIG+ A+L G P L
Sbjct: 216 IAENMHELRLLQIAGH-NLTEIGVRAILDGCPHL 248
>02_05_1203 -
34934635-34934749,34934865-34934923,34935019-34935120,
34935254-34935333,34935474-34935558,34935641-34935724,
34935842-34935927,34936053-34936135,34936226-34936479
Length = 315
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 443 LNIPYIANDEVLKYIGEHNKVLKLLDVS 526
L+I Y+ DEV++YIGEH K+ K D S
Sbjct: 285 LSIKYLVCDEVIQYIGEH-KLYKEADGS 311
>01_06_0888 + 32738275-32739567
Length = 430
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 572 GNPQLTQSLTVINIGMYGEENIDHTDVALLIRRLPNLTNLGSYSFVGKSISHIYNTDCPP 751
G+ L T++ +G + D V + R LP+L G FVG+ S YNTD P
Sbjct: 313 GDAPLLDGRTMLFVGDPCSRS-DGDVVRYIWRELPSLE--GRMLFVGRGCSRSYNTDQYP 369
Query: 752 NFK 760
F+
Sbjct: 370 GFE 372
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 329 IVEQGRHLTSLNLKGVW-VKDEHLPLMYQLIKNLTNLTALNIPYIANDEV--LKYIGEHN 499
+V LT L G+ VK +H+ + IK++ NL L I DE+ L+++G H
Sbjct: 701 VVTNLSRLTQLRCLGICDVKQDHMEKLCVSIKSMPNLVRLGIVSHGEDEILDLQHLG-HV 759
Query: 500 KVLKLLDVSGE 532
L+ L + G+
Sbjct: 760 PDLEWLHLRGK 770
>03_05_0298 -
22873933-22874040,22874807-22875407,22875517-22875596,
22875685-22875816
Length = 306
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 443 LNIPY-IANDEVLKYIGEHNKVLKLLDVS 526
L+I Y I DEV+KYIGEH K+ K D S
Sbjct: 78 LSIKYLIIRDEVIKYIGEH-KLYKEADGS 105
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 717 DLPTNE*LPRFVRFGNLRINNATSVWSMFSS 625
D+ NE + FVR + R N+T W++FS+
Sbjct: 656 DMARNEDVEGFVRVTHSRYENSTPAWTVFST 686
>07_03_0601 -
19872780-19873099,19873148-19873151,19874196-19874357,
19874429-19874617,19874687-19875010,19875103-19875378,
19875436-19875478,19876110-19876188,19876473-19876555,
19876708-19876782,19877324-19877490,19877960-19878370
Length = 710
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 713 KSISHIYNTDCPPNFKTKLQYIXDQQTNNKTMKAIVNLCP 832
+ + + DCP N + + NK KA++ LCP
Sbjct: 542 EDVDWVVQVDCPENIALYIHRVGRTARYNKRGKALIFLCP 581
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 389 EHLPLMYQLIKNLTNLTALNIPYIANDEVLKYIGEHNKVL 508
+H+P + L NL NL+ P I N L Y+G N L
Sbjct: 314 DHVPTLQTLAVNLNNLSGPVPPSIFNISSLAYLGMANNSL 353
>04_01_0038 + 446314-446787,446829-447350
Length = 331
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 485 IGEHNKVLKLLDVSGETDITEIGIDAMLSGNPQLTQ 592
+ +H V+ + G D+ + +DA SG P ++Q
Sbjct: 293 LSDHRAVITPESIQGVVDVVKANLDAFFSGKPLVSQ 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,473,742
Number of Sequences: 37544
Number of extensions: 340654
Number of successful extensions: 814
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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