Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M12
(832 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 31 1.0
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 31 1.0
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 31 1.0
AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical ... 30 2.3
AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical ... 28 7.1
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep... 28 7.1
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue... 28 7.1
AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical ... 28 9.4
AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical ... 28 9.4
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 NIKSLATGMFPVPYYRKVIEIIVEQGRHLTSL-NLKGVWVKDEHLPLMYQLIKNL 427
N+K L + + V YYRK I + LTSL + K W+ ++ + +Q +K L
Sbjct: 1254 NVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKL 1308
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 NIKSLATGMFPVPYYRKVIEIIVEQGRHLTSL-NLKGVWVKDEHLPLMYQLIKNL 427
N+K L + + V YYRK I + LTSL + K W+ ++ + +Q +K L
Sbjct: 1157 NVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKL 1211
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 266 NIKSLATGMFPVPYYRKVIEIIVEQGRHLTSL-NLKGVWVKDEHLPLMYQLIKNL 427
N+K L + + V YYRK I + LTSL + K W+ ++ + +Q +K L
Sbjct: 1168 NVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKL 1222
>AC024826-6|AAF60801.1| 379|Caenorhabditis elegans Hypothetical
protein Y55F3AM.9 protein.
Length = 379
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 350 LTSLNLKGVWVKDEHLPLMYQLIKNL 427
L S+NL VW+ D ++Y LI+NL
Sbjct: 169 LVSVNLYHVWLPDPQFTVLYDLIRNL 194
>AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical
protein C08G5.1 protein.
Length = 882
Score = 28.3 bits (60), Expect = 7.1
Identities = 27/148 (18%), Positives = 69/148 (46%), Gaps = 3/148 (2%)
Frame = +2
Query: 212 EYLDPSVRYYTMKLLLKENIKSLATGMFPVPYYRKVIEI---IVEQGRHLTSLNLKGVWV 382
E L ++ + + KLL E + L+ + PY +K+ +I + L L + +
Sbjct: 445 EQLFKNMGHLSSKLLASEKLVELSKALHSEPYQQKIGDISKMLTVSDDELPKLFNESHAL 504
Query: 383 KDEHLPLMYQLIKNLTNLTALNIPYIANDEVLKYIGEHNKVLKLLDVSGETDITEIGIDA 562
KD ++ + +++ L+ + ND L ++ + V+ ++ ++ ++G+
Sbjct: 505 KDIR-SIISEEKESIDALSTGTLLKTVND--LTFLNKIKPVIDVIRARRDSYPKKVGLPI 561
Query: 563 MLSGNPQLTQSLTVINIGMYGEENIDHT 646
+++ P + + L ++ + G EN ++T
Sbjct: 562 LIASLPSIKEKLAELSGYIEGIENSENT 589
>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
homolog protein.
Length = 1846
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = +2
Query: 452 PYI--ANDEVLKYIGEHNKVLK 511
PYI +NDEVL YIG KV+K
Sbjct: 1465 PYIGLSNDEVLNYIGMARKVIK 1486
>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
formation protein 2 protein.
Length = 1843
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Frame = +2
Query: 452 PYI--ANDEVLKYIGEHNKVLK 511
PYI +NDEVL YIG KV+K
Sbjct: 1462 PYIGLSNDEVLNYIGMARKVIK 1483
>AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical
protein Y87G2A.8b protein.
Length = 586
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 533 TDITEIGIDAMLSGNPQLTQSLTVINIG--MYGEENIDHTDVALLIRRLPNLTNL 691
TD+ IGI G +T+SL IG ++ N+D T VA + ++L T L
Sbjct: 184 TDVVNIGIGGSDLGPLMVTESLKNYQIGPNVHFVSNVDGTHVAEVTKKLNAETTL 238
>AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical
protein Y87G2A.8a protein.
Length = 551
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 533 TDITEIGIDAMLSGNPQLTQSLTVINIG--MYGEENIDHTDVALLIRRLPNLTNL 691
TD+ IGI G +T+SL IG ++ N+D T VA + ++L T L
Sbjct: 149 TDVVNIGIGGSDLGPLMVTESLKNYQIGPNVHFVSNVDGTHVAEVTKKLNAETTL 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,077
Number of Sequences: 27780
Number of extensions: 327106
Number of successful extensions: 734
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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