Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M12
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    25   1.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.0  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 94  SGVIRRXCRAIVRYGVLLLRKYGRYNRYLPGSYQLNI 204
           +G ++R   +  RY  L L K   +NRYL    ++ I
Sbjct: 5   NGEVKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEI 41


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 106 RRXCRAIVRYGVLLLRKYGRYNRYLPGSYQLNI 204
           +R  +   RY  L L K   YNRYL    ++ I
Sbjct: 9   KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEI 41


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 106 RRXCRAIVRYGVLLLRKYGRYNRYLPGSYQLNI 204
           +R  +   RY  L L K   YNRYL    ++ I
Sbjct: 271 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEI 303


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 211 GISRSFGEILHHETSA*REH*EFSDRYVSSSVLQK 315
           G+  ++GE+LH  TS   EH  F  +   S+ +QK
Sbjct: 399 GLLSAYGELLHALTSGKCEHRPFEPK---STAVQK 430


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 188  LINLILTSEYLDPSVRYYTMKLLLKENIKS 277
            L+N  L   YLD  V  +  KL+L++ I S
Sbjct: 1039 LVNDQLGQLYLDLEVEGFETKLVLEDGITS 1068


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,486
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)