Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M10
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 410 e-115
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 237 2e-63
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 223 3e-59
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 159 5e-40
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 107 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 101 1e-22
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 92 9e-20
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 68 1e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 53 4e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.002
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.078
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.10
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.18
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.41
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.55
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.3
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.9
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.1
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 5.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.1
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 410 bits (1010), Expect = e-115
Identities = 189/202 (93%), Positives = 196/202 (97%)
Frame = +1
Query: 151 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 330
NGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPI
Sbjct: 12 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPI 71
Query: 331 EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPA 510
EHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA
Sbjct: 72 EHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPA 131
Query: 511 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 690
YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMK
Sbjct: 132 FYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMK 191
Query: 691 ILTERGYSFTTTAEREIVRDIK 756
IL ERGY+F+TTAEREIVRDIK
Sbjct: 192 ILMERGYTFSTTAEREIVRDIK 213
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 237 bits (579), Expect = 2e-63
Identities = 107/203 (52%), Positives = 150/203 (73%), Gaps = 1/203 (0%)
Frame = +1
Query: 151 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 330
NGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PI
Sbjct: 16 NGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPI 75
Query: 331 EHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 507
E GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N P
Sbjct: 76 ERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVP 135
Query: 508 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 687
A+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 136 ALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQ 195
Query: 688 KILTERGYSFTTTAEREIVRDIK 756
L + G+ ++AE+EIVR+IK
Sbjct: 196 LQLRKSGHELVSSAEKEIVREIK 218
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 223 bits (544), Expect = 3e-59
Identities = 103/204 (50%), Positives = 146/204 (71%), Gaps = 2/204 (0%)
Frame = +1
Query: 151 NGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKY 324
NG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R +L +KY
Sbjct: 10 NGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKY 69
Query: 325 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 504
P+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 70 PMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGF 129
Query: 505 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 684
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL
Sbjct: 130 GGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYL 189
Query: 685 MKILTERGYSFTTTAEREIVRDIK 756
+ +L +GY+F TA+ E VR++K
Sbjct: 190 ISLLLRKGYAFNRTADFETVREMK 213
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 159 bits (385), Expect = 5e-40
Identities = 93/229 (40%), Positives = 128/229 (55%), Gaps = 34/229 (14%)
Frame = +1
Query: 151 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK------------ 267
NG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 12 NGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATE 70
Query: 268 --DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 438
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE
Sbjct: 71 DLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTE 130
Query: 439 APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGV 594
PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV
Sbjct: 131 PPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGV 190
Query: 595 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 735
+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 191 THIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 107 bits (257), Expect = 2e-24
Identities = 58/192 (30%), Positives = 105/192 (54%), Gaps = 3/192 (1%)
Frame = +1
Query: 151 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYP 327
NGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ + P
Sbjct: 31 NGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSP 86
Query: 328 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 507
E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N P
Sbjct: 87 FERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAP 145
Query: 508 AMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 681
++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G + Y
Sbjct: 146 SVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSY 205
Query: 682 LMKILTERGYSF 717
L+K+ + SF
Sbjct: 206 LLKLFQIKYPSF 217
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 101 bits (242), Expect = 1e-22
Identities = 59/186 (31%), Positives = 92/186 (49%)
Frame = +1
Query: 154 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE 333
GS + GF+G+D P+ V PS G + G + Y+ +S G + +K I
Sbjct: 19 GSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIR 70
Query: 334 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 513
+G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE+ PA
Sbjct: 71 NGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPAT 130
Query: 514 YVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 693
Y+A Q + +ASG+ T ++D G S IY+G+ L +G + D L +
Sbjct: 131 YLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQT 190
Query: 694 LTERGY 711
L ++ +
Sbjct: 191 LRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 91.9 bits (218), Expect = 9e-20
Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 2/190 (1%)
Frame = +1
Query: 154 GSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYP 327
GS + G+AG+++P + PS + GV + ++ YV DE Q I + +K
Sbjct: 18 GSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNG 71
Query: 328 IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 507
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + P
Sbjct: 72 KSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVP 131
Query: 508 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLM 687
A Y+ QAV +A+ ++T +++D G + P+ +G + I + LAG L +
Sbjct: 132 AFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIE 191
Query: 688 KILTERGYSF 717
++ F
Sbjct: 192 QLFNTMNIEF 201
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 68.1 bits (159), Expect = 1e-12
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Frame = +1
Query: 325 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 492
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 493 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 672
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 673 TDYLMKILTE 702
T +L +L E
Sbjct: 232 TQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 53.2 bits (122), Expect = 4e-08
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 18/220 (8%)
Frame = +1
Query: 151 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 330
NG+ KAGFAG P+ + R + + ++G+E + TL++
Sbjct: 12 NGAYHIKAGFAGGKVVE--IPNCLTRSKDGNRL--------FLGNELANCNDFTTLQFRR 61
Query: 331 EH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETF 498
H G + +W +W N + P ++ +LLT+ + Q++FE F
Sbjct: 62 AHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEF 121
Query: 499 NTPAMYVAIQAVLSLYASGRTTG--------------IVLDSGDGVSHTVPIYEGYALPH 636
A A L + G T +V+DSG +H +P+ +
Sbjct: 122 QFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFSVQEQ 181
Query: 637 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIK 756
A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IK
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIK 219
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Frame = +1
Query: 316 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 459
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 460 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 639
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 640 ILRLDLAGRDLTDYLMKILTERGYSF 717
++++ G D+T MK+L + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.078
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 509 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 643
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 506 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 643
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 506 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 643
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 506 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 643
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 385 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 528
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.18
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 184 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 327
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.41
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 485 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 643
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 0.96
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 485 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 643
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 497 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 643
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = -1
Query: 281 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLXTTNAAT 129
PT S P+ PT+ P P N S P PL TTN T
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTT 452
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.55
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 530 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 634
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 292 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 203
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 530 PCSRCTRPVVPPVSCWTPATVSPTPCPST 616
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 506 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 613
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 284 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 168
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 427 LLTEAPLNPKANREKMTQIMFETFN 501
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 546 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 698
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +3
Query: 441 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRR 620
+PQ + E++ D++R++ +RH RR P +A + R H + R R ++ R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR---QNGNVNR 1481
Query: 621 IRTPPRHPASGLSRSRPHRLPH 686
+ ++ +SR R H
Sbjct: 1482 NPRVSNNNSTNVSRERSSEANH 1503
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.2 bits (55), Expect = 5.1
Identities = 23/60 (38%), Positives = 27/60 (45%)
Frame = -3
Query: 321 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIXYY 142
F G +F CLI++IR +SH D EHG II C T L G I YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 321 FEGQDTSFALCLISYIRVLLSHTDHHA 241
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 524 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PV 664
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,948
Number of Sequences: 5004
Number of extensions: 67916
Number of successful extensions: 250
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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