Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M08
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 32 0.086
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.11
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 30 0.26
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 1.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 1.8
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 7.5
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.5
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 25 9.9
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 25 9.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 9.9
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 31.9 bits (69), Expect = 0.086
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 325 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQS 504
D+ ++ ++ +LQN LD+LS+ +D ++ + E L + IE ++SS F++
Sbjct: 275 DKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFEN 334
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 331 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTT 510
+ E+ L +++L+LQN + DLS DS+ E+ LRS L + +L + +T
Sbjct: 1614 ENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRS----LEDSVASLQKECKIKSNTV 1669
Query: 511 PNIQ 522
++Q
Sbjct: 1670 ESLQ 1673
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 334 EEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTTP 513
+E + L SQ L +Q+ L + +DS K E K ++ Q+L E ++ +
Sbjct: 80 KELSELSSQTLSVQSQLLKVKNSIDSYKNEWSKKTNDAQILLNSYETFCEEEALIEEKLK 139
Query: 514 NIQ 522
NI+
Sbjct: 140 NIE 142
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 331 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 474
Q E+ L+ ++ EL++ + V++ N ++ EN+ L +YI N
Sbjct: 381 QSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENENLKEYIRN 428
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 328 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVL 456
+ E RL + +DD+S ++++K + K+ SEN+ L
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGL 274
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 331 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 477
++E L S+ L L++L S KE+ +K+ N+++ ENL
Sbjct: 374 RKENLFLQSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENENL 422
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 367 ELQNTLDDLSQRVDSVKEENLKLRSEN 447
EL+N L++ SQR+ ++E+ K SEN
Sbjct: 1609 ELENQLNEKSQRIKELEEQAQKNSSEN 1635
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 125 IYFDNLTFR*TGHRLNIKILVSFKDVFNIQSIL 27
+YF +LTF TG++ N + +++F + IL
Sbjct: 816 VYFTDLTFLKTGNKDNFQNMINFDKRTKVTRIL 848
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -1
Query: 179 SSSARGILSSPHFCIITDIYFDNLTFR*TGHRLNIKILVSFKDV 48
SS ++ ILS+ C I +IY +N + + + ++SF DV
Sbjct: 461 SSGSQLILSASPTCTIENIYIENTRLHFSKSQTPEQTVISFIDV 504
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 9.9
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Frame = +1
Query: 346 RLISQVLELQNTLDDLSQRVDSV------KEENLK-LRSENQVLGQYIENLMSASS 492
RL +V +L+N LD +++R + + KEE ++ L +EN+ + Q ENL S
Sbjct: 556 RLQDEVNQLRNELDLVNKRNEDLLIELQGKEEKIQYLETENEEVLQKYENLQEELS 611
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 433 LRSENQVLGQYIENLMSASSVFQSTTPNIQKK 528
L+ N +L Y+EN S+ SVF P+I+ K
Sbjct: 255 LQKNNDILKTYVENAKSSLSVF----PDIEAK 282
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 298 ASFEPDSGIDEQEEKARLISQVLELQNTLDDLSQRVDS----VKEENLKLRSE 444
+ E GIDE + R I Q+ + DD +R+ S ++E N +LR++
Sbjct: 1985 SDIERIKGIDECRNRDRTIRQLEAQISKFDDDKKRIQSSVSRLEERNAQLRNQ 2037
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,735
Number of Sequences: 5004
Number of extensions: 48791
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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