Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M07
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    25   0.82 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.82 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   3.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.3  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.6  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 442 RLSRHQLLRQLNF*LAFLSLHYH 374
           RL RH   R LN   A L LH+H
Sbjct: 395 RLLRHNFNRHLNSNRAPLGLHFH 417


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 442 RLSRHQLLRQLNF*LAFLSLHYH 374
           RL RH   R LN   A L LH+H
Sbjct: 402 RLLRHNFNRHLNSNRAPLGLHFH 424


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 719 LPIPLYFXSRTPSEKKYSPGASDVPARSDPIITV 618
           +PIP    S   S   YSP  S  P    P+  V
Sbjct: 200 VPIPQRTASTASSASNYSPSQSPEPESVRPLSLV 233


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 686 PSEKKYSPGASDVPARSDP-IITVDAPRANDL 594
           P E+  SP   DVP  S P  I+ D     DL
Sbjct: 48  PEEEAASPTPGDVPTPSSPRSISEDPLNCRDL 79


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 544 NVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTS 654
           N   I +GG+Q V  + K+     +   +G   AGT+
Sbjct: 71  NATDITNGGLQKVAALKKTNPALKALFSLGGYAAGTA 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,814
Number of Sequences: 336
Number of extensions: 4018
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)