Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M07
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 307 1e-84
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.095
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 31 0.13
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 29 0.51
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.67
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.6
SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.6
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 27 2.1
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.1
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 4.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 8.3
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 8.3
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 307 bits (754), Expect = 1e-84
Identities = 149/238 (62%), Positives = 186/238 (78%), Gaps = 1/238 (0%)
Frame = +1
Query: 13 PINDMITAQLGVTLQDANYILEKSKKGKLPIINNDGELVALIARTDLKKARSYPNASKDS 192
P ++IT G++L+ AN +L KSKKGKLP+++ D LVAL++ TDL K +P ASK S
Sbjct: 186 PREELITTAEGISLERANEMLRKSKKGKLPVVDKDDNLVALLSLTDLMKNLHFPLASKTS 245
Query: 193 N-KQLLVGAAIGTRDTDRERLKLLVNNGVDVIVLDSSQGNSTYQIKMIKYIKETYPEIQV 369
+ KQL+V AAIGTRD DR RL LL G+D +V+DSSQGNS +QI+MIK+IK+TYP+I V
Sbjct: 246 DTKQLMVAAAIGTRDDDRTRLALLAEAGLDAVVIDSSQGNSCFQIEMIKWIKKTYPKIDV 305
Query: 370 VGGNVVTRMQAKNLIDAGVDALRVGMGSGSICITQEVMACGCPQATAVYQVASYARHFNV 549
+ GNVVTR Q +LI AG D LRVGMGSGS CITQEVMACG PQATA+ QVA +A F +
Sbjct: 306 IAGNVVTREQTASLIAAGADGLRVGMGSGSACITQEVMACGRPQATAIAQVAEFASQFGI 365
Query: 550 PVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFFSDGVRLXKYRGMGSL 723
VIADGGIQ+VGH++KSL+LGA+ VMMG LLAGT+E+PGEY+ +G R YRGMGS+
Sbjct: 366 GVIADGGIQNVGHMVKSLSLGATAVMMGGLLAGTTESPGEYYVREGQRYKSYRGMGSI 423
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.095
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = -2
Query: 449 PIPTLKASTPASIKFLACILVTTLPPTTCISG*VSFMYFIILIW*VEFP*DESRTITSTP 270
P+ T +T S+ + + + +T TT + S Y + + S +TSTP
Sbjct: 526 PVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTP 585
Query: 269 LFTSNFSRSLSV--SRVPIAAPTN 204
+ T+N + S SV + PI +P +
Sbjct: 586 VTTTNCTTSTSVLYTSTPITSPNS 609
Score = 30.3 bits (65), Expect = 0.29
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = -2
Query: 449 PIPTLKASTPASIKFLACILVTTLPPTTCISG*VSFMYFIILIW*VEFP*DESRTITSTP 270
P+ T +T SI + + + +T TT + S Y + + S +TSTP
Sbjct: 467 PLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTP 526
Query: 269 LFTSNFSRSLSV--SRVPIAA---PTNNC 198
+ T+N + S SV + P+ + T NC
Sbjct: 527 VTTTNCTTSTSVLYTSTPVTSTPLATTNC 555
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 293 SRTITSTPLFTSNFSRSLSVSRVPIAAPTNNCLLES 186
S +TSTPL T+N + S SV ++N + S
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISS 518
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 293 SRTITSTPLFTSNFSRSLSVSRVPIAAPTNNCLLES 186
S +TSTPL T+N + S SV ++N + S
Sbjct: 542 STPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISS 577
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 148 DLKKARSYPNASKDSNKQLLVGAAIGTRDTDRERLK 255
D+KK RS NAS D KQ + A +G + RE LK
Sbjct: 36 DIKKLRSETNASMDLVKQSVEEAGVGNLELAREILK 71
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 553 VIADGGIQSVGHIIKSLALGASTVMMG 633
V+ D G++S I K+LALGA V++G
Sbjct: 329 VLFDSGVRSGADIAKALALGAKMVLIG 355
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 29.1 bits (62), Expect = 0.67
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -2
Query: 164 LAFFKSVLAINATSSPSLLMIGNFPFLL 81
L KS+L+I SS SLL++G +PFLL
Sbjct: 407 LGLLKSLLSIGDLSS-SLLILGRYPFLL 433
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.6
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +1
Query: 109 NNDGELVALIARTDLKKARSYPNASKDSNKQLLVGAAIGTRDTDR-ERLKLLVNNGVDVI 285
+ D + L A + S NA N G + T ER K + NGVD I
Sbjct: 59 STDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQI 118
Query: 286 VLDSSQGNSTYQIKMIKYIKETYPEIQVV 372
+++ K+ KY KET P + V
Sbjct: 119 HHSNNEKAKIRFSKIEKYTKETRPTVSEV 147
>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 25 MITAQLGVTLQDANYILEKSKKG 93
M T LG +QD +++ +K+KKG
Sbjct: 1 MTTTPLGKMIQDGDFVFQKAKKG 23
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 400 AKNLIDAGVDALRVGMGSGSI 462
AKNLI AG+D++ V G GS+
Sbjct: 281 AKNLISAGIDSIIVCGGDGSL 301
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 491 PQAITSCVIQIEPLPIPTLKASTPASIKFLACILVTTL 378
P +T+ +E + PT+ +TP I +A ++ TT+
Sbjct: 288 PTVVTTTTPMVETMITPTVVTTTPMVILVMAVVMETTI 325
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +1
Query: 49 TLQDANYILEKSKKGKLPIINNDGELV----ALIARTDLKKARSYPNASKDSNKQ 201
TL N ILE KKG +N++ E+V L A +++K+ S N+ +D K+
Sbjct: 211 TLGSDNLILEAKKKGLKLELNDNNEIVDQRQILTAGLNIRKS-SANNSMRDDKKR 264
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 576 LNSTIGND--WYIKMTSIGSYLVHCSGLRTTTSHHFLCDTNRA 454
LN GN W++K+T++ ++ +G+R H D RA
Sbjct: 1065 LNKLQGNCALWFLKLTNLATFTRQYAGIRGLPYFHLADDIIRA 1107
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 251 SRSLSVSRVPIAAPTNNCLLESLDAFG*LLAFFKSVLAINATSSPSLLMI 102
S S+S +R+ I PT N + + G + FF L IN T L++
Sbjct: 821 STSISNTRLAIQTPTGNIVRLREERSGNGVIFFSLSLTINETGEYRALIL 870
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,878
Number of Sequences: 5004
Number of extensions: 65087
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -