Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M07
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical ... 278 3e-75
AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical ... 278 3e-75
AF016427-7|AAB65350.1| 358|Caenorhabditis elegans Hypothetical ... 109 1e-24
Z35604-1|CAA84676.2| 744|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.4
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.4
AF016679-3|AAB66160.1| 578|Caenorhabditis elegans Hypothetical ... 29 3.4
AF016679-2|AAB66159.1| 658|Caenorhabditis elegans Hypothetical ... 29 3.4
>AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical
protein T22D1.3b protein.
Length = 462
Score = 278 bits (682), Expect = 3e-75
Identities = 134/218 (61%), Positives = 168/218 (77%), Gaps = 1/218 (0%)
Frame = +1
Query: 73 LEKSKKGKLPIINNDGELVALIARTDLKKARSYPNASKDSNKQLLVGAAIGTRDTDRERL 252
L++ + GKLPI+N++GEL AL+ R+DL KAR YP AS DS QLL GAA+ TR + +
Sbjct: 219 LKEHRLGKLPIVNDNGELCALLCRSDLLKARDYPMASYDSKGQLLCGAAVNTRGESQYTV 278
Query: 253 KLLVNNGVDVIVLDSSQGNSTYQIKMIKYIKETYPEIQVVGGNVVTRMQAKNLIDAGVDA 432
+V GVDV+++DSS G+STYQI M++YIKE +P +QV+ GNVVTR QAK LID G D
Sbjct: 279 DRVVEAGVDVLIIDSSNGSSTYQISMLRYIKEKHPHVQVIAGNVVTRAQAKLLIDQGADG 338
Query: 433 LRVGMGSGSICITQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALG 612
LR+GMGSGSICITQ+VMA G Q TAVY VA YA +P++ADGGI+ VG+I K+++LG
Sbjct: 339 LRIGMGSGSICITQDVMAVGRAQGTAVYDVARYANQRGIPIVADGGIRDVGYITKAISLG 398
Query: 613 ASTVMMGSLLAGTSEAPGEYFFS-DGVRLXKYRGMGSL 723
AS VMMG LLA T+EAPGEYF+ GVR+ KYRGMGSL
Sbjct: 399 ASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSL 436
>AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical
protein T22D1.3a protein.
Length = 534
Score = 278 bits (682), Expect = 3e-75
Identities = 134/218 (61%), Positives = 168/218 (77%), Gaps = 1/218 (0%)
Frame = +1
Query: 73 LEKSKKGKLPIINNDGELVALIARTDLKKARSYPNASKDSNKQLLVGAAIGTRDTDRERL 252
L++ + GKLPI+N++GEL AL+ R+DL KAR YP AS DS QLL GAA+ TR + +
Sbjct: 219 LKEHRLGKLPIVNDNGELCALLCRSDLLKARDYPMASYDSKGQLLCGAAVNTRGESQYTV 278
Query: 253 KLLVNNGVDVIVLDSSQGNSTYQIKMIKYIKETYPEIQVVGGNVVTRMQAKNLIDAGVDA 432
+V GVDV+++DSS G+STYQI M++YIKE +P +QV+ GNVVTR QAK LID G D
Sbjct: 279 DRVVEAGVDVLIIDSSNGSSTYQISMLRYIKEKHPHVQVIAGNVVTRAQAKLLIDQGADG 338
Query: 433 LRVGMGSGSICITQEVMACGCPQATAVYQVASYARHFNVPVIADGGIQSVGHIIKSLALG 612
LR+GMGSGSICITQ+VMA G Q TAVY VA YA +P++ADGGI+ VG+I K+++LG
Sbjct: 339 LRIGMGSGSICITQDVMAVGRAQGTAVYDVARYANQRGIPIVADGGIRDVGYITKAISLG 398
Query: 613 ASTVMMGSLLAGTSEAPGEYFFS-DGVRLXKYRGMGSL 723
AS VMMG LLA T+EAPGEYF+ GVR+ KYRGMGSL
Sbjct: 399 ASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSL 436
>AF016427-7|AAB65350.1| 358|Caenorhabditis elegans Hypothetical
protein F32D1.5 protein.
Length = 358
Score = 109 bits (263), Expect = 1e-24
Identities = 58/182 (31%), Positives = 96/182 (52%)
Frame = +1
Query: 175 NASKDSNKQLLVGAAIGTRDTDRERLKLLVNNGVDVIVLDSSQGNSTYQIKMIKYIKETY 354
+AS D+ L + + I D + + + I LD + G S ++ I+ ++E Y
Sbjct: 91 SASPDTFNNLAISSGISDNDWTKLNTVITELPQLKYICLDVANGYSESFVEFIRRVREAY 150
Query: 355 PEIQVVGGNVVTRMQAKNLIDAGVDALRVGMGSGSICITQEVMACGCPQATAVYQVASYA 534
P+ ++ GNVVT + LI +G D ++VG+G GS+C T++ G PQ +AV + A A
Sbjct: 151 PKHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRKKAGVGYPQLSAVLECADAA 210
Query: 535 RHFNVPVIADGGIQSVGHIIKSLALGASTVMMGSLLAGTSEAPGEYFFSDGVRLXKYRGM 714
N V++DGG + G + K+ GA VM+G L AG ++ G+ +G + + GM
Sbjct: 211 HGLNGHVMSDGGCSNPGDVAKAFGAGADFVMIGGLFAGHDQSGGDLIEHNGKKFKLFYGM 270
Query: 715 GS 720
S
Sbjct: 271 SS 272
>Z35604-1|CAA84676.2| 744|Caenorhabditis elegans Hypothetical
protein ZK1058.1 protein.
Length = 744
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = +1
Query: 235 TDRERLKLLVNNGVDVIVLDS-SQGNSTYQIKMIKYIKET-YPEIQVVGGNVVTRMQAKN 408
T E + V+ V VI S + G+ T ++I +K+ P+I VV G V+ K
Sbjct: 644 TPLEAAQQAVDADVHVIGASSLAAGHLTLIPQLIGELKKLGRPDILVVAGGVIPPQDYKE 703
Query: 409 LIDAGVDALRVGMGSG-SICITQ--EVMACGCPQA 504
L DAGV AL G G+ C Q E + P+A
Sbjct: 704 LYDAGV-ALVFGPGTRLPACANQILEKLEANLPEA 737
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Frame = -1
Query: 657 LRCPRKE*SHHYSRCPKGQ*F---------NNMTN*LNSTIGN--DWYIKMTSIGSYLVH 511
L C ++ + HY RCP G+ N+ ++ + T N D K +G YL
Sbjct: 2954 LFCMNQQCAQHYVRCPSGRCIPETWQCDGDNDCSDGWDETHTNCTDTAGKKICVGDYLFQ 3013
Query: 510 CSGLRTTTSHHFLCD-TNRATTHSDSQGINSCVN 412
C L+ S F+CD + SD + C N
Sbjct: 3014 CDNLK-CISRAFICDGEDDCGDGSDEHSRHGCGN 3046
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Frame = -1
Query: 657 LRCPRKE*SHHYSRCPKGQ*F---------NNMTN*LNSTIGN--DWYIKMTSIGSYLVH 511
L C ++ + HY RCP G+ N+ ++ + T N D K +G YL
Sbjct: 2954 LFCMNQQCAQHYVRCPSGRCIPETWQCDGDNDCSDGWDETHTNCTDTAGKKICVGDYLFQ 3013
Query: 510 CSGLRTTTSHHFLCD-TNRATTHSDSQGINSCVN 412
C L+ S F+CD + SD + C N
Sbjct: 3014 CDNLK-CISRAFICDGEDDCGDGSDEHSRHGCGN 3046
>AF016679-3|AAB66160.1| 578|Caenorhabditis elegans Hypothetical
protein T28C12.4b protein.
Length = 578
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 19 NDMITAQLGVTLQDANYILEKSKKGKLPIINNDGELVALIARTDLKKARSYPNASKDSNK 198
N + T++LG+T+ +N I ++ + P+I DGE++ + + P+
Sbjct: 280 NGLPTSKLGMTMFFSNTIFKECQLPLAPVI--DGEILPHDLKVLRETQEHVPSLVGGGEY 337
Query: 199 QLLVGAAIG-TRDTDRERLKLLVNNGVDVI 285
+ L+ AIG R T++E +N+ +DV+
Sbjct: 338 EALLFCAIGLLRGTEKE-----INSAIDVL 362
>AF016679-2|AAB66159.1| 658|Caenorhabditis elegans Hypothetical
protein T28C12.4a protein.
Length = 658
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 19 NDMITAQLGVTLQDANYILEKSKKGKLPIINNDGELVALIARTDLKKARSYPNASKDSNK 198
N + T++LG+T+ +N I ++ + P+I DGE++ + + P+
Sbjct: 360 NGLPTSKLGMTMFFSNTIFKECQLPLAPVI--DGEILPHDLKVLRETQEHVPSLVGGGEY 417
Query: 199 QLLVGAAIG-TRDTDRERLKLLVNNGVDVI 285
+ L+ AIG R T++E +N+ +DV+
Sbjct: 418 EALLFCAIGLLRGTEKE-----INSAIDVL 442
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,147,200
Number of Sequences: 27780
Number of extensions: 372820
Number of successful extensions: 1034
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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