Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M07
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.72 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.7  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 565 GGIQSVGHII-KSLALGASTVMMGSLLAGTSEAPGEYF 675
           GGI+ + HII K L +  S V+MG+ LA  SE   E F
Sbjct: 129 GGIELISHIISKQLHIPVS-VLMGANLA--SEVANEMF 163


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 211 GAAIGTRDTDRERLKLLVNNGVDVI 285
           G+ I TR    ER++L   NG+DV+
Sbjct: 324 GSVINTRG---ERIQLTEKNGIDVL 345


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 510 CSGLRTTTSHH 478
           C+GL TTT+H+
Sbjct: 405 CNGLHTTTAHN 415


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 564 WWNSVSWSYY*IIGPWGIDCNDG-ITPC 644
           W  ++ W+   ++G WG    +G +T C
Sbjct: 170 WTYTIPWALMPVMGVWGRFVPEGFLTSC 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,592
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)