Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M06
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1515 + 34117383-34117732,34117833-34117918,34118227-341182... 34 0.14
01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835 33 0.18
03_02_0263 - 6948618-6948818,6948909-6948971,6949078-6949146,694... 31 0.73
01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816 31 0.73
09_04_0645 - 19186545-19186928,19187148-19187291,19187419-191875... 30 2.2
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 29 2.9
03_06_0141 - 31955782-31956801 29 3.9
02_05_1284 - 35449589-35450125,35450255-35451166,35451298-35451333 29 3.9
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362... 29 5.1
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946... 28 6.8
>04_04_1515 +
34117383-34117732,34117833-34117918,34118227-34118297,
34118457-34118524,34118692-34118753,34119010-34119107,
34119545-34119626,34119935-34120077,34120233-34120381,
34120461-34120594,34120714-34120832,34120926-34121014,
34121398-34121515
Length = 522
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 570 LPIHILANILRNLKLGDIRNVILTCKTFKNLIVNDNGVW 686
LPI +LA ILR L D C+ ++ L+ +DNG+W
Sbjct: 50 LPIDVLAQILRLLGPADAARSTAVCRAWR-LLASDNGLW 87
>01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835
Length = 346
Score = 33.5 bits (73), Expect = 0.18
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2
Query: 310 YYKIFVKGINIFFTDNKLVINGNIRSFLTFFS 215
YYK+ +G +FF+DN+L +N + + +T F+
Sbjct: 253 YYKLLPQGKGLFFSDNQLRVNATMNALVTRFA 284
>03_02_0263 -
6948618-6948818,6948909-6948971,6949078-6949146,
6949232-6949297,6949380-6949526,6949608-6949702,
6949845-6950016,6952187-6952318,6953581-6953674,
6954067-6954184,6955884-6957057
Length = 776
Score = 31.5 bits (68), Expect = 0.73
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 561 ILQLPIHILANILRNLKLGDIRNVILTCKTFKNLIVNDNGVWRAICE 701
++ LP + A +L + D+ V TCK ++L +DN +W+ CE
Sbjct: 340 LMALPGDVKAKVLEFVPGVDLARVQCTCKELRDLAADDN-LWKKKCE 385
>01_03_0096 + 12492502-12492708,12500878-12501294,12501397-12501816
Length = 347
Score = 31.5 bits (68), Expect = 0.73
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 310 YYKIFVKGINIFFTDNKLVINGNIRSFLTFFS 215
YYK+ + +FF+DN+L +N + + +T F+
Sbjct: 251 YYKLLPLDLGLFFSDNQLRVNATMNALVTRFA 282
>09_04_0645 -
19186545-19186928,19187148-19187291,19187419-19187507,
19187876-19188266,19189213-19189316,19189669-19189690
Length = 377
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/43 (27%), Positives = 29/43 (67%)
Frame = -2
Query: 715 KINLSSQIALHTPLSLTIKFLKVLHVNITFLISPSFKFLKILA 587
K+ +SSQ + + ++ K+L++ H++I+ SP+F +L +++
Sbjct: 194 KLRISSQTQIVSTQTVPGKYLRLKHLHISLNRSPNFDYLSLVS 236
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -2
Query: 310 YYKIFVKGINIFFTDNKLVINGNIRSFLTFFS 215
YYK+ + +FF+DN+L +N + + ++ F+
Sbjct: 192 YYKLLPLNLGLFFSDNQLRVNATLGASVSSFA 223
>03_06_0141 - 31955782-31956801
Length = 339
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 552 SINILQLPIHILANILRNLKLGDIRNVILTCKTFKNLIVNDN 677
S ++L LP+ +L I+ + ++ TCK + +I+ D+
Sbjct: 41 SPSLLDLPLDVLLKIVARCDAATVLSLAATCKALRRIILGDD 82
>02_05_1284 - 35449589-35450125,35450255-35451166,35451298-35451333
Length = 494
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +3
Query: 597 LRNLKLG--DIRNVILTCKTFKNL 662
LRNLKLG DI N+I TCK + L
Sbjct: 189 LRNLKLGETDIPNIIATCKLLEYL 212
>10_08_0403 -
17635530-17635578,17635737-17635820,17636110-17636219,
17637507-17637638,17638497-17638576,17638877-17639008,
17639534-17639648,17640244-17640286,17640359-17640493,
17641347-17641414,17641473-17641478
Length = 317
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 513 IICGFVLHLGIPMSINILQLPIHILANILRNLKLGDIRNVILTC 644
+I G +L + I +S+ + LP++I+ +L L LG + L C
Sbjct: 97 LIGGLLLDVLISVSLGVSALPVNIIIGVLIVLGLGTALRLALEC 140
>04_04_0689 -
27292271-27292709,27293717-27293856,27294572-27294664,
27295614-27296012,27296258-27296392,27296482-27296835
Length = 519
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 628 FLISPSFKFLKILAKICIGNCKILIDIGIPRCNTNPQIIR 509
+ ISP++KF + L K C +I+ I + N QI+R
Sbjct: 317 YFISPTYKFEQCLVKGCHKRLRIVHTIELNEGGANIQIVR 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,650,898
Number of Sequences: 37544
Number of extensions: 275577
Number of successful extensions: 472
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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