Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_M05
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    31   0.11 
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        28   0.81 
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   7.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   7.5  
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    25   10.0 

>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 292 GVLKTEEPHLAEADRXHNLIEELXPGGRLLDREXEFRVHRRHADVHLFSSGNHFDSYDHT 113
           GV  T++P+L E+   H +     PGGR L  +   ++  + A     + G+  D  + T
Sbjct: 36  GVQTTKKPYLHESRHKHAMRRPRGPGGRFLTADKVSKLRAQEAAEAAANGGSTGDDVNAT 95

Query: 112 HTAD 101
           +  D
Sbjct: 96  NAND 99


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 540 LAWTAYEANNTEVSGGQYISSDKIAF 463
           ++W    A+NT V+G   +S DKI F
Sbjct: 102 VSWVRKTASNTSVAGSDSVSRDKIPF 127


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 557 DXVLRVWLGPRTKPTTPRSPE 495
           D +  VW    TKP TP SP+
Sbjct: 574 DKIDTVWKSSVTKPETPTSPQ 594


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 80  TQSACDLIRCVCVII 124
           T   CD++RC+C+I+
Sbjct: 229 TTICCDIMRCLCLIV 243


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 288 TPTPRATSLGSSCTXR*CNKTSRKRIHXSSNS 383
           T TPR  +L  + + R  N+ SR+R+  SS S
Sbjct: 377 TNTPRLGNLSETTSFRSENEPSRRRLLPSSRS 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,432
Number of Sequences: 5004
Number of extensions: 32124
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)