Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M02
(810 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 112 1e-24
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 112 1e-24
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 112 1e-24
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 112 1e-24
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 111 2e-24
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 103 6e-22
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 85 4e-16
AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1 p... 38 0.057
AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1 p... 38 0.057
AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1 p... 38 0.057
AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1 p... 38 0.057
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 112 bits (270), Expect = 1e-24
Identities = 54/139 (38%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Frame = +3
Query: 399 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 569
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 36 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 95
Query: 570 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRDXS*LY 749
QA+ +V DDIMD S RRG CWY++P VG+ A ND+ L+ + ++ LK R+ Y
Sbjct: 96 QAFFLVADDIMDSSLTRRGQTCWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQP-YY 153
Query: 750 EKCLSSLMKLYGRTSMGPT 806
+ ++ +T +G T
Sbjct: 154 LNLIELFLQSSYQTEIGQT 172
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 112 bits (270), Expect = 1e-24
Identities = 62/189 (32%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Frame = +3
Query: 249 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 419
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 55 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 112
Query: 420 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 599
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 113 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 172
Query: 600 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRDXS*LYEKCLSSLMKL 779
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R+ Y + ++
Sbjct: 173 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQP-YYLNLIELFLQS 230
Query: 780 YGRTSMGPT 806
+T +G T
Sbjct: 231 SYQTEIGQT 239
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 112 bits (270), Expect = 1e-24
Identities = 62/189 (32%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Frame = +3
Query: 249 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 419
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 420 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 599
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 171
Query: 600 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRDXS*LYEKCLSSLMKL 779
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R+ Y + ++
Sbjct: 172 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQP-YYLNLIELFLQS 229
Query: 780 YGRTSMGPT 806
+T +G T
Sbjct: 230 SYQTEIGQT 238
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 112 bits (270), Expect = 1e-24
Identities = 62/189 (32%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Frame = +3
Query: 249 WPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDW---L 419
W + R +S M + EK+ F +++ L + ++ P+IGD L
Sbjct: 54 WTEEPRALCSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVL-TEDEMGH-PEIGDAIARL 111
Query: 420 KKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDI 599
K++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+ QA+ +V DDI
Sbjct: 112 KEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDI 171
Query: 600 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRDXS*LYEKCLSSLMKL 779
MD S RRG CWY++P VG+ A ND+ L+ + ++ LK R+ Y + ++
Sbjct: 172 MDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQP-YYLNLIELFLQS 229
Query: 780 YGRTSMGPT 806
+T +G T
Sbjct: 230 SYQTEIGQT 238
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 111 bits (268), Expect = 2e-24
Identities = 54/139 (38%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Frame = +3
Query: 399 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 569
P+IGD LK++L YN +GGK+ RG+T V++++ + +P K +L+ A +GWCVE+
Sbjct: 29 PEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELL 88
Query: 570 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRDXS*LY 749
QA+ +V DDIMD S RRG CWY++P VG+ A ND+ L+ + ++ LK R+ Y
Sbjct: 89 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AINDANLLEACIYRLLKLYCREQP-YY 146
Query: 750 EKCLSSLMKLYGRTSMGPT 806
+ ++ +T +G T
Sbjct: 147 LNLIELFLQSSYQTEIGQT 165
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 103 bits (248), Expect = 6e-22
Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 3/139 (2%)
Frame = +3
Query: 399 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 569
P+IGD LK++L YN +GGK+ R +T ++++ + P K +L+ A +GWCVE+
Sbjct: 31 PEIGDAIARLKEVLEYNAIGGKYNRRLTVAVAFRELVDPRKQDADSLQRAWTVGWCVELL 90
Query: 570 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRDXS*LY 749
QA+ +V DDIMD S RRG CWY++P VG+ A +D+ L+ + ++ LK R+ Y
Sbjct: 91 QAFFLVADDIMDSSLTRRGQICWYQKPGVGLD-AIDDANLLEACIYPLLKLYCREQP-YY 148
Query: 750 EKCLSSLMKLYGRTSMGPT 806
+ ++ +T +G T
Sbjct: 149 LNLIELFLQSSYQTEIGQT 167
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 84.6 bits (200), Expect = 4e-16
Identities = 39/115 (33%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Frame = +3
Query: 399 PQIGDW---LKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMF 569
P+ GD LK++L YN +GGK+ RG+ +++++ + +P K+ +L+ A +GW ++
Sbjct: 4 PETGDATARLKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDADSLQWAPTVGWYAQLL 63
Query: 570 QAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRD 734
QA+ +V DDIMD S +G WY++ +G+ A ND++L+ + ++ LK R+
Sbjct: 64 QAFFLVADDIMDSSLTCQGQISWYQKLGMGLD-AINDAILLEACIYCLLKLYCRE 117
>AL139333-5|CAI15284.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.5 bits (83), Expect = 0.057
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 264 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 434
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 435 YNLVGGKHTRGITTV-ISYKTI 497
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL139333-4|CAM21599.1| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.5 bits (83), Expect = 0.057
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 264 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 434
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 435 YNLVGGKHTRGITTV-ISYKTI 497
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-2|CAI42426.1| 2369|Homo sapiens dopey family member 1
protein.
Length = 2369
Score = 37.5 bits (83), Expect = 0.057
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 264 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 434
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 435 YNLVGGKHTRGITTV-ISYKTI 497
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
>AL121716-1|CAI42425.2| 2465|Homo sapiens dopey family member 1
protein.
Length = 2465
Score = 37.5 bits (83), Expect = 0.057
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 264 RYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQ---IGDWLKKMLH 434
+Y+N A + A KN E +E L ++ LQN +K VP+ IG L + LH
Sbjct: 13 KYRNYVAAIDKALKNFEYSSEWADLISALGKLNKVLQNNAKYQVVPKKLTIGKRLAQCLH 72
Query: 435 YNLVGGKHTRGITTV-ISYKTI 497
L GG H + + T I +K I
Sbjct: 73 PALPGGVHRKALETYEIIFKII 94
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,237,592
Number of Sequences: 237096
Number of extensions: 2528137
Number of successful extensions: 4540
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4539
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10036353240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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