Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_M01
(720 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 74 2e-14
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 50 3e-07
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 46 5e-06
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 28 1.2
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 2.0
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 27 2.7
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 3.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 3.6
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 27 3.6
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro... 26 4.7
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 26 6.2
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 6.2
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 26 6.2
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 25 8.2
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 73.7 bits (173), Expect = 2e-14
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +2
Query: 206 KHGDMLTMHYTGTLHDGHKFDSSYDRDQPFTFQIGVGQVIKGWDQGL 346
K GD +TMHYTGTL +G KFDSS DR PF IGVGQ+I+GWD+G+
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGV 64
Score = 52.4 bits (120), Expect = 6e-08
Identities = 26/59 (44%), Positives = 36/59 (61%)
Frame = +3
Query: 306 LALGK*SRDGTRALLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINIGD 482
+ +G+ R + M +GEK KLTI GYG RG +IPP++TL F+VEL+ I D
Sbjct: 51 IGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAIND 109
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 50.4 bits (115), Expect = 3e-07
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +2
Query: 137 AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLHDGHKFDSSYDRDQPFTFQIG 310
+ P+ LK VV V G + +G + M Y G L +G FD + + +PF F +G
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN-TKGKPFAFILG 306
Query: 311 VGQVIKGWDQGLA 349
G+VI+GWD G+A
Sbjct: 307 RGEVIRGWDVGVA 319
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +3
Query: 363 GEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 476
G +RK+TIPA + YG + IP ++TL FEV+L+ +
Sbjct: 324 GGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKLVRV 360
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 46.0 bits (104), Expect = 5e-06
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +2
Query: 146 EVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLHDGHKFDSSYDRDQPFTFQIGVGQVI 325
+V E V +G +K ++M Y G L +G FD + +PFTF +G+ +VI
Sbjct: 254 QVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVI 312
Query: 326 KGWDQGL 346
KGWD G+
Sbjct: 313 KGWDVGI 319
Score = 30.7 bits (66), Expect = 0.22
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 345 LLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELINI 476
++ M VG +R + IPA++ YG + IP ++ L F+V+L+ +
Sbjct: 319 IVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLLAV 361
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 504 FKEIDADKDNMLSREEVSDYLKKXMVPXDGGEVSEDIXQMLESHDKLVEXIFQHEDKDKN 683
FK D D+D +S E+ LK + G + ED Q ++V+ DKD++
Sbjct: 99 FKIYDIDRDGYISNGELYLVLKMMV----GTNLREDQLQ------QIVDKTIMEVDKDRD 148
Query: 684 GFIXHEEF 707
G I EEF
Sbjct: 149 GKISFEEF 156
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 196 HEVQARRYAHHALHWHATRRTQVRLEL*SRSTFYVPNWRWASDQGM 333
H++ + R + LHW L S+ + N WAS +GM
Sbjct: 936 HDILSERVLYSPLHWFEKTAAGRILNRFSKDMYATDNLLWASLEGM 981
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +3
Query: 408 ERGAGN-VIPPHATLHFEVEL 467
E G GN +IPP + H+EVEL
Sbjct: 42 EPGHGNLIIPPDVSAHYEVEL 62
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 87 RRCAACLCWLPWPGPRSRV 143
R C C CWLP SRV
Sbjct: 113 RMCGTCKCWLPDRSHHSRV 131
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 455 EMQCSVGRNHVAGSALSVAQGCGNSQFTFLTNAHVKQG 342
++ ++GR H+AG + GC Q +FL+ V G
Sbjct: 996 QLSYNLGRLHIAGDYIFSCVGCRTLQRSFLSGLSVCTG 1033
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 243 RYTTDTSSTRVMIAINLLRSKLALGK*SRDGT-RALLDMCVGEKRKLTI 386
++ +TS V +A N L K ALG ++DG L ++ +G+ TI
Sbjct: 234 KHFNETSGDTVCVAYNPLCEKFALGSTAQDGAYNRLGNLWIGDFHSETI 282
>SPAC23H4.10c |thi4||thiamine-phosphate
dipyrophosphorylase/hydroxyethylthiazole kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -2
Query: 608 FAYFTTVGGNHXLLQIVAHFFAGEHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSV 438
+AY+ + GN + +A GE ++ GVD + R+T V +L E +C V
Sbjct: 348 YAYYDIIKGNEGEIMNLA----GEQGLMRGVDSISQHTLAARITAVHRLAVERRCVV 400
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 294 LRSKLALGK*SRDGTRALLDMCVGEKRKLTIPASLGYGER 413
+ ++L + + D +L +CVG L +PA+ YG R
Sbjct: 85 MNAELGISYDAMDNAAGVLFICVGYFTYLAMPATFLYGRR 124
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 405 GERGAGNVIPPHATLHFEVELINIGDSP 488
G+ G+G + P AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 131 TFAGPEVTELKTEVVSVPEGCTTKSKH 211
TF ++T L+ +++ +PEG +T KH
Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKH 200
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 438 HATLHFEVELINIGDSPPATNVFKEIDADKDNMLSREEVSD-YLKK 572
H L+ + ELI+ S VF+ ID N+ R+ D Y+K+
Sbjct: 265 HKDLNEDEELISSSPSEVGKRVFRLIDLSTGNVYRRDTGGDIYVKR 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,447
Number of Sequences: 5004
Number of extensions: 55892
Number of successful extensions: 162
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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