Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L24
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        27   0.22 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   8.1  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 136 MNYRAQNDSPEPKGTKPTREASS 204
           +NY  Q++SP P G+ P    SS
Sbjct: 53  VNYAQQHNSPSPTGSSPQHSGSS 75


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 71  TIRFLHFHYAISLXHTHASWVR 6
           TI  L+ HY     H  A WVR
Sbjct: 316 TIVILNVHYRKPSTHKMAPWVR 337


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 156 ILCPVIHTCVFEICSAC 106
           + CPV+      IC AC
Sbjct: 65  VSCPVLRAYTCPICGAC 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,739
Number of Sequences: 438
Number of extensions: 5097
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)