Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_L20
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 32 0.11
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 30 0.46
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 27 2.4
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 4.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 5.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.6
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 25 9.9
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 31.9 bits (69), Expect = 0.11
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 211 AVKSISVDTVTVTKLSTGWTRTK*GASTLTLIQSSRCTS-RSKPPATDT 354
AV + +T TVT + G T T GAST+T Q S TS + K AT T
Sbjct: 215 AVTVTATETYTVTATNGGSTITSTGASTVTSTQPSTVTSTQRKNTATTT 263
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 29.9 bits (64), Expect = 0.46
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = -3
Query: 754 NLSVGVSLGSXGWELGMSSIDVSPGIGQSYKNLASTPFQAAKLKYFTDNGSTSLKLIKG 578
N+ V + W+LG S++D+ + + K + S P + ++L+ + G T + +++G
Sbjct: 259 NIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIP-EFSRLEMLKEIGQTHMIILEG 316
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -3
Query: 685 PGIGQSYKNLASTPFQAAKLK----YFTDNGSTSLKLI 584
PGIG +YKN+ S F K + +F S LK+I
Sbjct: 260 PGIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLKII 297
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 370 SLILASVIQFTKLWSAVEGTSSPNYAATC-DAMPRAPSP 483
S+ L I F L SAV G+ S +Y TC + +PRA P
Sbjct: 7 SVFLFLHIVFYSLLSAVNGSPSLDYFETCSNFVPRAGIP 45
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 603 DPLSVKYFSFAAWNGVEAKFL 665
DPL +K F F W+ E FL
Sbjct: 686 DPLDIKMFKFTHWSYSEENFL 706
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.6
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = +1
Query: 211 AVKSISVDTVTVTKLST--GWTRTK*GASTLTLIQSSRCTSRSKPPATDT*CSLKSLILA 384
+ S + + + T LS+ T T ++ L+ + S+ TS S P T + + +
Sbjct: 427 SANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASS 486
Query: 385 SVIQFTKLWSAVEGTSSPNYAATCDAMPRAPSPHPKY 495
+ + SA +S+P +A S P Y
Sbjct: 487 TPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/76 (22%), Positives = 30/76 (39%)
Frame = +1
Query: 268 TRTK*GASTLTLIQSSRCTSRSKPPATDT*CSLKSLILASVIQFTKLWSAVEGTSSPNYA 447
T T ++ L+ + S+ TS S P T + + ++ + SA +S+P +
Sbjct: 334 TATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTS 393
Query: 448 ATCDAMPRAPSPHPKY 495
A S P Y
Sbjct: 394 ANSTTSTSVSSTAPSY 409
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.4 bits (53), Expect = 9.9
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +3
Query: 498 SPIELR--GFYIKISEDGLVEFGREGQALPLISFN-DVDPLSVKYFSFAAWNGVEAKFLY 668
SP +R F + + D VEF GQ L FN + +F FA N V +
Sbjct: 42 SPFHVRFGKFSLLLPSDKKVEFSVNGQ---LTGFNMKLGDGGEAFFVFATENAVPRELQT 98
Query: 669 DCPIPGDTSIEDIPNSHPXEPKLTPTDKLKR 761
+ TS + P+ + EP+ DK+ +
Sbjct: 99 SPIVSPTTSPKQTPSINVTEPQDLELDKVSQ 129
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 570 QALPLISFNDVDPLSVKYFSFAAW 641
QA+ LIS +++D +SV Y AW
Sbjct: 555 QAIALISRDELDCVSVSYGELKAW 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,744
Number of Sequences: 5004
Number of extensions: 69990
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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