Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L19
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    28   1.7  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    26   5.2  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   5.2  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   6.8  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 533 YILWMPQRGGKRSEVFDQMPNLLFEKSNIFIKTI 432
           +IL +P RGG  +++ D +  LL   S   I T+
Sbjct: 7   WILSVPSRGGSNADLCDDIERLLVSGSTSLISTV 40


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 757 KLIEYKHGGENIKSLKSFVIFKQLKHSKKTNKKNW 653
           K+ E+KHG +++ + K   I K+ K  +K +K+ +
Sbjct: 107 KVDEFKHGNDSLLARKVQRIVKKKKQREKKSKRKY 141


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 682 HSKKTNKKNWSLFLLYNNFRIFF 614
           H   T K NW L L Y N ++ F
Sbjct: 139 HKTVTKKHNWMLRLYYGNNKVLF 161


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 288 KKIACMGGRAHSPPGVKWLLEP 223
           KK    GG  H P  V WLL P
Sbjct: 229 KKYGTDGGPLHDPNTVMWLLRP 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,519
Number of Sequences: 5004
Number of extensions: 70119
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)