Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L19
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.59 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.77 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 589 YFWFKFLNRKISENYYTIKTD 651
           ++WF +L+R    NYY + ++
Sbjct: 441 FYWFAYLSRSERINYYNVNSN 461


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 748 EYKHGGENIKSLKSFVIFKQLKHSKKTNKK 659
           EY+  G NI + K+  IF+  +H + T  K
Sbjct: 155 EYQMNGNNITNFKNSNIFQLKQHMRDTMNK 184


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 310 LYMVPE*KKNCLYGWTSSQPT 248
           L+M P  KKNC   W S  PT
Sbjct: 391 LHMQPR-KKNCCRSWLSKFPT 410


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 310 LYMVPE*KKNCLYGWTSSQPT 248
           L+M P  KKNC   W S  PT
Sbjct: 391 LHMQPR-KKNCCRSWLSKFPT 410


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 167 SIVKTAAPPFKPNALLLHGRNRQ 99
           S+V +   PF+P+  +L   NRQ
Sbjct: 277 SLVASRTWPFRPSGTVLKDINRQ 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,257
Number of Sequences: 438
Number of extensions: 5012
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)