Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_L14
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    66   4e-12
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    41   2e-04
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   5.2  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   9.0  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   9.0  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   9.0  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    25   9.0  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
 Frame = +2

Query: 278 YSFQGIPYAKPPLGSLRFKAPQPPEP-WDGIRDATAEGNVCAQ------IDPVFAKSYVG 436
           + F GI YAKPP+G LR++ P   E  +D   D      +C Q       + V    +  
Sbjct: 19  HRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQPFYNNRKNQVRNPDFKY 78

Query: 437 DENCLFLNVYTPSTD--GAFLPVMIWIHGGGFKWGSG-NTNLYGP-DFLVD---RDVVVV 595
           DE+CLFLN++ P+ +      PV+ +IHGG  + G+  +     P D   D      ++V
Sbjct: 79  DEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSPAKFILV 138

Query: 596 TINYRCGALGFLS----LNTPEVPGNAGIKDIVQAIXWVKDNIHHFGGNAGNLTIFGEXA 763
           +  +R    GFL+    L       N G  D    + W   +I  FGGN  N+ + G  A
Sbjct: 139 SPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISA 198

Query: 764 G 766
           G
Sbjct: 199 G 199


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = +2

Query: 494 PVMIWIHGGGFKWGSGNT-NLYGPDFLVDRDVVVVTINYRCGALGFLSLNTPEVPGNAGI 670
           P  +W HGGG+  G+ NT N +          VVV ++YR           PE P  A I
Sbjct: 101 PCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRL---------APEDPFPACI 151

Query: 671 KDIVQAIXWVKDNIHHFGGNAGNLTIFGEXAG 766
            D  +A+ +  +N    G N   + + G  AG
Sbjct: 152 DDGWEALLYCYENADTLGINPNKIAVGGSSAG 183


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +1

Query: 76  IKHLCNELNKILINNSGVNNEFPTMISAVNEFLDDLRGGRMSESPL---VTVEQGQLQGT 246
           I +LC+ + ++ +++S +N+++  ++S  N  L+D      +   L   +++    L+  
Sbjct: 240 IAYLCSLVEELKLHSSIMNDKYVCLVSKHNNALEDKFNSEAARQLLQKSLSIVASNLKQA 299

Query: 247 DRKQPVREGLLQFPRNTICE 306
           + K    E  L   +N+I E
Sbjct: 300 ENKTISYEEKLSIAQNSINE 319


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 372 MPRRKGTCVLKSIQSSRNPMSAMKTAC 452
           +PR  G CVL      RNP S +  +C
Sbjct: 431 LPREWGYCVLDEGHKIRNPDSEISISC 457


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 353 PWDGIRDATAEGNVCAQIDPVFAKSYVGDENCLFL 457
           P + IRD     N   ++DP FAK+YV     LF+
Sbjct: 449 PAECIRDC----NKAIELDPNFAKAYVRKAQALFM 479


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -3

Query: 490 ECSISARGVH-I*EQAVFIADIGFREDWIDLSTHVPF 383
           EC  S  GV  + +   FI+  GF E W      +PF
Sbjct: 137 ECQFSEGGVFALLQNDTFISITGFEEPWRKTYASIPF 173


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
 Frame = +1

Query: 91  NELNKI-LINNSGVNNEFPTMISAVNEFLDDLRGGRMSESPLVTVEQGQLQGT-DRKQPV 264
           NE  K  ++ NS  +N             + LR  R++ +   T++    + T  +K  V
Sbjct: 75  NEYRKTDVVKNSDTDNGLLKSAVETITLENGLRNRRVNVTKKSTLKASVKKSTLKKKNEV 134

Query: 265 REGLLQFPRNTICETPIGVFAI*GPTTSRTLGRH 366
              LLQ   + ICE P  +     P  + +L  H
Sbjct: 135 DPALLQGVPDYICENPYAIIVGLNPGITSSLKGH 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,552
Number of Sequences: 5004
Number of extensions: 76424
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)