Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_L10
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|... 31 0.21
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 29 0.64
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 2.0
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.6
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 3.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 24 4.5
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 26 4.5
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 26 6.0
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch... 26 6.0
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 25 7.9
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 7.9
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 25 7.9
>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 570
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 532 FYYGYVLTHIPGGMLAERFG-GKWVLGLGLLSTAICTFITPITVKMGGATAL 684
FY GY++ PG + + F GK+V GL S ++ F+ GG AL
Sbjct: 146 FYVGYIVGQFPGHYIMQTFPLGKFV-GLVTFSWSVIVFLHCCAYNYGGLIAL 196
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 532 FYYGYVLTHIPGGMLAERFG-GKWVLGLGLLSTAICTFI 645
FY G+V+ IPG ML +RF K+V STA+ T I
Sbjct: 133 FYVGFVIGQIPGHMLLQRFPVSKFVAA----STALWTII 167
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 517 LILGSFYYGYVLTHIPGGMLAERFGGKWVLGLGLLSTAICTFITPITVKMGGATAL 684
+++ FY +VL P L +RFG +L +LS + GG A+
Sbjct: 100 IMISIFYIPFVLCAFPFSYLYKRFGAARILPFFMLSFGAMSLCQAAVKNFGGMMAV 155
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 367 KKNVAVEGDEHYDPNACPDLNIVANATSP 453
++ A+E D++Y+P+ P +ANA +P
Sbjct: 415 QRKAAIEEDDNYEPDENPLTETLANAHNP 443
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 217 FDKML--TGWKLALSKLFIIPQRYVLAVMGLLAIANAYTMRV 336
FDK + TG+++ S LF+I MGL I+ Y+ R+
Sbjct: 281 FDKHIDATGYEIEASSLFVIGNFLFFYEMGLFNISVIYSNRI 322
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Frame = -2
Query: 614 PNPRTHFPPNRSANIPPGICVS-------T*P**KEPRINPCVASLHSNSTASS 474
PNP H S ++PP VS T P NP A++H S A+S
Sbjct: 130 PNPAAHHAELPSGSVPPSASVSRANSTATTTPHKAGVVSNPAAANVHVLSVAAS 183
Score = 20.6 bits (41), Expect(2) = 4.5
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2
Query: 626 VDSKPNPRTHFPP 588
V SKPN T PP
Sbjct: 97 VSSKPNQTTAMPP 109
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 217 FDKML--TGWKLALSKLFIIPQRYVLAVMGLLAIANAYTMRV 336
FDK + TG+++ + LF+I + MGL I Y+ R+
Sbjct: 235 FDKHIDATGYEIEATSLFVIGNFFFFYEMGLFNIPVIYSNRI 276
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 490 FEWSEATQGLILGSFYYGYVLTHIPGGMLAERFGGKWVLGLGLLSTAICTFITPIT 657
+ S A QGL+ G G + I +A+RFG + + +G + I I +T
Sbjct: 55 YSLSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSI-IGFCAVYIIGIIVQVT 109
>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 406 PNACPDLNIVANATSP 453
PN CPD++++ N T P
Sbjct: 164 PNFCPDMSVLDNRTHP 179
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 619 VNLI-PEPIFLRIVQLTFPQEYVLVRNHNKKNRESIPVSLRS 497
VN + P PI+ +V TFP+E + + + R PV + S
Sbjct: 217 VNAVAPGPIYTPLVSSTFPKEKIELSDQVPLGRMGQPVEVAS 258
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 320 AFAIANSPITANT*RCGIMNSFDSASFHPVNILSNYKSIRICHA*RLATLPRLT 159
AF + NT G +F S++F P N+LSN S H+ +P T
Sbjct: 78 AFGNRTGNMNRNTSMSGY--TFGSSNFVPYNLLSNTPSFTTSHSSSTTFVPPAT 129
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 490 FEWSEATQGLILGSFYYGYVLTHIPGGMLAERFG-GKWVLGLGLL-STAICTFITPI 654
+ +S A QGL++G G + + L +RFG K ++G L+ T + +T I
Sbjct: 51 YSYSSARQGLLVGMVNTGTTVGCLLSSPLGDRFGKRKCIMGWTLVYITGVIVQLTTI 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,952
Number of Sequences: 5004
Number of extensions: 62175
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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